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compareMS2 tree drawing fails (for large trees?)

bugSomething isn't workingSomething isn't working

Status: Open.

#67 In 524D/compareMS2;

· magnuspalmblad opened on Nov 24, 2025

Filter spectra from a third dataset before comparison

enhancementNew feature or requestNew feature or request

Status: Open.

#66 In 524D/compareMS2;

· magnuspalmblad opened on Sep 17, 2025

Only use JSON output of compareMS command line

enhancementNew feature or requestNew feature or request

Status: Open.

#64 In 524D/compareMS2;

· 524D opened on Sep 5, 2025

Add reference data to help first-time user to get started

Status: Open.

#63 In 524D/compareMS2;

· 524D opened on Sep 4, 2025

Output intersect and complements in MGF

enhancementNew feature or requestNew feature or request

Status: Open.

#55 In 524D/compareMS2;

· magnuspalmblad opened on Jan 18, 2024

For self-comparison, skip redundant file checks and memory allocation

enhancementNew feature or requestNew feature or request

Status: Open.

#54 In 524D/compareMS2;

· magnuspalmblad opened on Jan 9, 2024

Possible intensity scaling issue for two-dataset comparison

bugSomething isn't workingSomething isn't working

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#53 In 524D/compareMS2;

· magnuspalmblad opened on Jan 3, 2024

SDRF support for CLI and GUI

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In 524D/compareMS2;

· magnuspalmblad opened on Aug 9, 2023

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compareMS2 2.1

exporting mzQC runQuality for compareMS2 comparison with reference dataset?

enhancementNew feature or requestNew feature or request

Status: Open.

#49 In 524D/compareMS2;

· magnuspalmblad opened on Apr 18, 2023

Update 3.1 Configuring compareMS2 in README.md

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#46 In 524D/compareMS2;

· magnuspalmblad opened on Oct 6, 2022

Replace Figure 1 in README.md with screenshot

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#45 In 524D/compareMS2;

· magnuspalmblad opened on Oct 6, 2022

Add (as experimental feature) summary of m/z and intensities of spectral comparisons in a specified dot product and delta-m/z range

enhancementNew feature or requestNew feature or request

Status: Open.

#42 In 524D/compareMS2;

· magnuspalmblad opened on Jun 3, 2022