Rastair

[andrew-watchmaker]

Submitting a Container

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Checklist

1. Misc

• My tool doesn't exist in BioConda
• The image can be built

2. Metadata

• LABEL base_image
• LABEL version
• LABEL software.version
• LABEL about.summary
• LABEL about.home
• LABEL about.license
• MAINTAINER

3. Extra (optionals)

• I have written tests in test-cmds.txt
• LABEL extra.identifier
• LABEL about.documentation
• LABEL about.license_file
• LABEL about.tags

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[andrew-watchmaker]

PR for Issue #603

[biocontainers-bot]

software.version label not matching directory version name

[biocontainers-bot]

please specify in about.license_file the location of the license file in the container, or a url to license for this release of the software.

[biocontainers-bot]

No biotools label defined, please check if tool is not already defined in biotools (https://bio.tools) and add extra.identifiers.biotools label if it exists. If it is not defined, you can ignore this comment.

[mboudet]

Thanks for the PR. The only blocking error is the 'software.version label not matching directory version name'. The directory containing the Dockerfile should match the software version (so v0.8.2).

The license_file warning is non-blocking, since there is a clear LICENSE file in the remote.

[andrew-watchmaker]

Thanks for that @mboudet! Just pushed the directory rename

[biocontainers-bot]

please specify in about.license_file the location of the license file in the container, or a url to license for this release of the software.

[biocontainers-bot]

No biotools label defined, please check if tool is not already defined in biotools (https://bio.tools) and add extra.identifiers.biotools label if it exists. If it is not defined, you can ignore this comment.

[biocontainers-bot]

No test-cmds.txt (test file) present, skipping tests

[andrew-watchmaker]

@mboudet thank you for the speedy review and merge! I'm trying to piece together the biocontainers project from the documentation but struggling to get a clear picture. I noticed that rastair is not listed as available on the biocontainers registry: https://biocontainers.pro/registry?all_fields_search=rastair&sort_order=asc&sort_field=default&offset=0&limit=30

Is there something I need to do to get it listed on the registry? Also, my intention for adding rastair to BioContainers was to have it available on both quay.io and as a singularity/apptainer image within depot.galaxyproject.org (I'm wanting to have it support a Nextflow pipeline). Do I need to configure and submit a bioconda package to get that supported? Any guidance would be helpful!

[mboudet]

Sadly, the biocontainer website is mostly deprecated these days, so it's not really up-to-date regarding available containers.

Nonetheless, the docker image was created and is available here https://hub.docker.com/r/biocontainers/rastair/tags
And the singularity image here: https://containers.biocontainers.pro/s3/SingImgsRepo/rastair/v0.8.2_cv1/

Though if you need it to be on quay.io and on the depot.galaxyproject.org, you'll need to submit a conda package, yes.