CHAPBookWorkflows

Repository of production-ready CHESS Analysis Pipeline (CHAP) workflows.

Individual areas should present all relevant files for CHAPBook workflows:

• chap.yaml provides high level description of presented workflow with the following Workflow structure:

name: SAXSWAX
type: saxswaxs workflow
group: beamline-X
version: v0.0.1
description: bla-bla-bla
reference: http://some.site/tomo
config: pipeline.yaml

This example only contains subset of available fields defined in Workflow.

• config parameter from chap.yaml should provide proper CHAP configuration pipeline file, in aforementioned case it is pipeline.yaml
• the workflow area may contain all necessary files used by given workflow
• conda.yml should provide all necessary dependencies and define workflow conda environment, i.e. it should have the same name as the directory, e.g.

cat tomo/conda.yml
name: tomo
channels:
  - astra-toolbox
  - conda-forge
  - defaults
dependencies:
  - python>=3.9
  ...