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I am having a problem when calculating the p-value using seekr_find_pval

Status: Open.

#31 In CalabreseLab/seekr;

· herrroaa84 opened on Jul 12, 2025

seekr_kmer_counts：how to don't do per KB, just count

Status: Open.

#28 In CalabreseLab/seekr;

· liuyuchenlab opened on Feb 28, 2024

How to reproduce the communities in your article?

Status: Open.

#26 In CalabreseLab/seekr;

· kikegoni opened on Apr 19, 2023

AttributeError: module 'networkx.classes' has no attribute 'graph'

Status: Open.

#25 In CalabreseLab/seekr;

· petersamoaa opened on Jan 21, 2023

option to transpose output

Status: Open.

#24 In CalabreseLab/seekr;

· jmcalabr opened on Aug 31, 2021

seekr_domain_pearson percentile function overwrites data in rows with identical names

Status: Open.

#23 In CalabreseLab/seekr;

· jmcalabr opened on Aug 31, 2021

option to exclude k-mers with zero counts?

Status: Open.

#20 In CalabreseLab/seekr;

· jmcalabr opened on Nov 25, 2020

Blank lines in fasta don't have a useful error message

Status: Open.

#16 In CalabreseLab/seekr;

· Jessime opened on Jul 24, 2020

-nb flag & how to view gml output file?

Status: Open.

#5 In CalabreseLab/seekr;

· kac2053 opened on Mar 14, 2019