Allow multiple barcode segments (e.g. split-seq)#75
Draft
ChangqingW wants to merge 10 commits intoDavidsonGroup:mainfrom
Draft
Allow multiple barcode segments (e.g. split-seq)#75ChangqingW wants to merge 10 commits intoDavidsonGroup:mainfrom
ChangqingW wants to merge 10 commits intoDavidsonGroup:mainfrom
Conversation
Member
|
At the moment I've been handling this with multiple piped calls to Flexiplex. While this works 'fine', it would be useful to have it built-in. However, it seems to me that the changes needed to implement this would be quite a significant code change with some questions about ergonomics. For instance:
|
Contributor
Author
|
I would prefer to just make this |
moved the old Consumer/Writer Stage loop into writer_thread to allow streaming output during processing
fdb5a9c to
a406bc5
Compare
slightly slower than the previous threading but preserved input order
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Adds a new -B flag to support multiple (combinatorial) barcodes, each with their own allow-list