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Update xref tables to fit with new pipeline#93

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JAlvarezJarreta merged 4 commits intomainfrom
xref/new_pipeline_changes
Jul 16, 2025
Merged

Update xref tables to fit with new pipeline#93
JAlvarezJarreta merged 4 commits intomainfrom
xref/new_pipeline_changes

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@TamaraNaboulsi
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This change includes some column renames, table removals, and column edits to fit better with the new python xref pipeline.

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github-actions bot commented Jul 16, 2025

Coverage

Coverage Report
FileStmtsMissCoverMissing
core
   __init__.py00100% 
   models.py7870100% 
ncbi_taxonomy
   __init__.py00100% 
   models.py270100% 
ncbi_taxonomy/api
   __init__.py10100% 
   utils.py87297%149, 231
xrefs
   xref_source_db_model.py260100% 
   xref_update_db_model.py1920100% 
TOTAL1120299% 

Tests Skipped Failures Errors Time
26 0 💤 0 ❌ 0 🔥 1.578s ⏱️

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Looks good to me, cheers!

@JAlvarezJarreta JAlvarezJarreta merged commit cddf7c1 into main Jul 16, 2025
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@JAlvarezJarreta JAlvarezJarreta deleted the xref/new_pipeline_changes branch July 16, 2025 15:52
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2 participants