ThermoFinder: A sequence-based thermophilic proteins prediction framework

1. Introduction

These files contain source code for ThermoFinder. And established datasets in this article are also provided in huggingface. ThermoFinder is a python implementation of the model.

2. Installation

python = 3.8.13

You could configure enviroment by running this

pip install -r requirment.txt

3. Requirments

In order to run successfully, the generation of embedded vectors requires GPU. We utilized an NVIDIA GeForce RTX 3080 with 10018MiB to embed protein sequences to a vector. Other hardware equipments are not necessary.

4. Usage

For ThermoFinder, you could run Fused_model_XX.py file, model training and prediction are all implemented.

5. Contact

If you have any question, you could contact yuhanid147@gmail.com.