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SVDB export produces unsorted output and doesn't define contigs in header

Status: Open.

#76 In J35P312/SVDB;

· fellen31 opened on Nov 8, 2024

SVDB build and export removes chr prefix

Status: Open.

#75 In J35P312/SVDB;

· fellen31 opened on Nov 8, 2024

query raises an error if keys are not present in the VCF. Can we perhaps have a fallback for such cases?

Status: Open.

#74 In J35P312/SVDB;

· ramprasadn opened on Oct 25, 2024

Missing lower CIPOS and CIEND from CNVkit

Status: Open.

#72 In J35P312/SVDB;

· khurrammaqbool opened on Oct 9, 2024

Discrepancy between using --db and --sqdb built from the same VCF

Status: Open.

#70 In J35P312/SVDB;

· fellen31 opened on Sep 18, 2024

List index out of range

Status: Open.

#69 In J35P312/SVDB;

· gavinmonahan opened on Oct 2, 2023

Only keep one INFO field

Status: Open.

#67 In J35P312/SVDB;

· Akazhiel opened on Jan 9, 2023

set=Intersection is not fully informative; add FOUND_IN tag?

Status: Open.

#59 In J35P312/SVDB;

· dnil opened on Oct 12, 2022

Enhance the FORMAT column of merge subcommand.

Status: Open.

#58 In J35P312/SVDB;

· xiucz opened on Sep 21, 2022

Bug: missing headers

Status: Open.

#51 In J35P312/SVDB;

· fgvieira opened on May 6, 2022

Refactoring

Status: Open.

#35 In J35P312/SVDB;

· DanielAndreasen opened on Nov 24, 2020

Add new variants to existing database

Status: Open.

#34 In J35P312/SVDB;

· DanielAndreasen opened on Nov 24, 2020