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1. FrancisCrickInstitute/cellprofiler_processing FrancisCrickInstitute/cellprofiler_processing Public

   CellProfiler data processing pipeline - feature selection, normalization, landmark analysis, and hierarchical clustering for Cell Painting high-throughput screens

   Python

2. FrancisCrickInstitute/spc-cosine-analysis FrancisCrickInstitute/spc-cosine-analysis Public

   Cell Painting phenotypic analysis pipeline for SPC machine learning embeddings - distance metrics, landmark identification, compound scoring, and hierarchical clustering

   Python

3. FrancisCrickInstitute/spc-data-explorer FrancisCrickInstitute/spc-data-explorer Public

   Dashboard for exploring cell painting data from Cell Profiler & AI/ML models

   Python

4. FrancisCrickInstitute/crypto-trail-analyser FrancisCrickInstitute/crypto-trail-analyser Public

   An image analysis pipeline to quantify Cryptosporidium trails

   Python

5. harmony-index-parser harmony-index-parser Public

   A utility for extracting plate barcodes and measurement signatures from Revvity Harmony high-content imaging system export files.

   Python

6. harmony-concatenator-web harmony-concatenator-web Public

   Web app for concatenating Revvity Harmony imaging data. Upload, process, download.

   HTML