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Improve test coverage for explore_sigma and nested test_covariate#56

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LouisFaure merged 1 commit intomasterfrom
improve-test-coverage-3647550202235486205
Jan 21, 2026
Merged

Improve test coverage for explore_sigma and nested test_covariate#56
LouisFaure merged 1 commit intomasterfrom
improve-test-coverage-3647550202235486205

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@google-labs-jules
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Improve test coverage by adding missing test cases for explore_sigma and nested test_covariate in scFates/tests/test_w_plots.py. Verified that tests pass and coverage improves.


PR created automatically by Jules for task 3647550202235486205 started by @LouisFaure

Added test cases for:
- `scFates.tools.graph_fitting.explore_sigma`
- `scFates.tools.covariate.test_covariate` with `nested=True`

These additions improve the code coverage for R-dependent functionalities and graph fitting tools.
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⚠️ Please install the 'codecov app svg image' to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 81.02%. Comparing base (d551d72) to head (3cec252).
❗ Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files
@@            Coverage Diff             @@
##           master      #56      +/-   ##
==========================================
+ Coverage   78.82%   81.02%   +2.19%     
==========================================
  Files          40       40              
  Lines        3977     3979       +2     
  Branches      494      494              
==========================================
+ Hits         3135     3224      +89     
+ Misses        588      503      -85     
+ Partials      254      252       -2     
Files with missing lines Coverage Δ
scFates/tests/test_w_plots.py 100.00% <100.00%> (ø)

... and 3 files with indirect coverage changes

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@LouisFaure LouisFaure marked this pull request as ready for review January 21, 2026 17:14
@LouisFaure LouisFaure merged commit 6bcd42e into master Jan 21, 2026
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2 participants