Bohra is an extensive pipeline for taking genome sequences (short reads or assemblies) and running common bioinformatics assays across the, including genotyping, AMR detection, and phylogenetics.
Bohra is a modern replacement for the Nullarbor pipeline. It is written in Python and Nextflow instead of Perl and Make.
- Install the base packaghe
% conda create -n bohra -c bioconda bohra
% borha --version
- Install all the analysis modules. This can take a long time (10-60 min) but it's worth it!
% bohra deps install
- Test everthing worked ok
% bohra test --cpus 8
Read the Bohra website to learn how to use all the availaile features.
