aboutDE

Let's gather here resources about Differential Equations to share among our theoretical group.

Presentations

• ODE in silico: https://github.com/KevCaz/ODEinsilico

Code

R

• packages required:

install.packages(c("devtools", "deSolve", "odeint", "rmarkdown"))
devtools::install_github("inSileco/graphicsutils")

• scripts:

  • R/RK4.R: pure R (an naive) implementation of the Runge–Kutta methods (order 4) by @KevCaz.
  • R/2Dsystems.R Lotka-Volterra with the deSolve package by Torbjorn.
  • R/vectorField.R: a code to play with a vector field drawn for the linear system in 2 dimensions by @KevCaz.
  • R/ODEwithR.Rmd: let's build up a document to gather some thoughts, see https://mccannlab.github.io/aboutDE/ODEwithR.html

Julia

• DifferentialEquations.jl

Mathematica

• Mathematica: a side note to mention that you get it for free if you use a raspberry pi

• 📹 multimedia:

  • http://www.chaos-math.org/en: CHAOS A MATHEMATICAL ADVENTURE
  • https://www.youtube.com/watch?v=kjBOesZCoqc&list=PLZHQObOWTQDPD3MizzM2xVFitgF8hE_ab

Tout Doux list

• a commented list of foundational papers that use dynamical