v1.10.0

This release is prepared for noresm3_0_beta01.

Release highlights

• Remove CGS units
• New NUOPC stream capability for dust deposition
• Implement R2OMIP protocol
• Support DOM classes
• Support for initial conditions from WOA in situ temperature and practical salinity climatology

Externals_BLOM.cfg

package	tag
CVMix	v0.98-beta
M4AGO	v1.1.1
GSW-Fortran	master

Component (updated/not updated) relative to v1.8.0

What's Changed

• Remove CGS units support by @matsbn in #515
• make N-deposition for SSPs for 1/4 BLOM by @YanchunHe in #523
• Sediment sulfate reduction and denitrification thresholds - tuning by @jmaerz in #526
• Output switches for output volumes of iHAMOCC by @jmaerz in #478
• Sediment output by @jmaerz in #528
• Fluxes, surface Alk, PO4, NO3 and ODZ volume to i-monitoring files by @jmaerz in #529
• fix remin diag - in case of kwrbioz_off=True remin was formerly under… by @jmaerz in #530
• Fix output volume settings by @jmaerz in #532
• introduce capability to switch off dynamic sediment POM age by @jmaerz in #533
• Compatible Piecewise Parabolic Method (CPPM) added as option for layer thickness and tracer transport by @matsbn in #531
• Bugfix of mod_advect.F90 by @matsbn in #541
• Bugfix of mod_inigeo.F90 by @matsbn in #542
• Write now to netcdf3_64bit by @jmaerz in #544
• add new nuopc stream capability for dust(fedep) forcing by @mvertens in #524
• Ocean-atmosphere N coupling - enable to separately couple NH3 and N2O by @jmaerz in #537
• Add compsets and tests for JRA repeat year forcing by @TomasTorsvik in #545
• Bugfix: typo in module name by @TomasTorsvik in #548
• Modified shortwave absorption module by @matsbn in #546
• Set character length to 512 for all filenames by @TomasTorsvik in #549
• Set default atm. N2O concentration to pre-industrial value by @jmaerz in #552
• New namelist default settings when using ALE method. by @matsbn in #553
• Nutrient limitation output by @jmaerz in #539
• Correct and add a CaCO3 dissolution rate constant by @JorgSchwinger in #554
• Add tnx2v1 chlorophyll concentration climatology by @matsbn in #555
• Whole array initialization by @matsbn in #558
• Fix CPPM for tripolar grids by @matsbn in #561
• fix for ERI_C2.TL319_tn14.NOIIAJRAOC.betzy_intel test by @mvertens in #563
• Allow longer time for 0.5 degree ERS test by @TomasTorsvik in #564
• Add "noforcing" experiment configuration by @matsbn in #565
• Calendar dependency of HAMOCC processes by @jmaerz in #514
• Implement R2OMIP protocol by @TimotheeBrgs in #534
• Add output for dust and soluble iron deposition fluxes by @JorgSchwinger in #572
• Make lkwrbioz=true and lto2remin=true default values, new tuning by @JorgSchwinger in #574
• Option to use dust/iron deposition data from Myriokefalitakis et al. 2018 (doi:10.5194/bg-15-6659-2018) by @JorgSchwinger in #575
• Fix r2o stoichiometric ratio of riverine labile DOC in mo_apply_rivin by @TimotheeBrgs in #579
• Add variable fesoly to HAMOCC namelist for tuning of iron cycle by @JorgSchwinger in #580
• Various small fixes on the river2omip feature by @TimotheeBrgs in #584
• Add stream functionality for the new GESAMP dust/iron deposition data set by @mvertens in #582
• Support for initial conditions from WOA in situ temperature and practical salinity climatology, offline horizontally regridded to model grid by @matsbn in #576
• Various fixes related to riverine labile DOC and inventories by @TimotheeBrgs in #589
• Fix externals.cfg file for GSW-Fortran by @jmaerz in #593
• fix ODZ volume calculation by @jmaerz in #597
• Change name convention for inventory output file by @TomasTorsvik in #590
• add new mapping for woa18 input data by @mvertens in #573
• fixed dust issue where it was growing each year by @mvertens in #598
• Fixes an issue with truncated model depth when using WOA initial conditions. by @matsbn in #599
• Reference potential density adaptation to evolving model state by @matsbn in #596
• Bugfix related to adding global attributes when using PnetCDF. by @matsbn in #601
• Eddy diffusivity modifications by @matsbn in #603
• DOC code of Jerry by @jmaerz in #571
• fix init DOM classes by @jmaerz in #605
• Include parenthesis to ensure correct evaluation of if statement by @TomasTorsvik in #606
• fix typo by @jmaerz in #607
• Default parameters for the N-cycle and M4AGO in hybrid coordinates by @jmaerz in #608
• remove nml-rates from OMP by @jmaerz in #611
• Add missing parameters to nc-file attributes by @jmaerz in #612
• HAMOCC test cases by @jmaerz in #613
• fixes to run the aggregation scheme by @jmaerz in #614
• HAMOCC working precision for real values by @jmaerz in #609
• detritus remin also in DOM classes case T- and O2-dependent by @jmaerz in #617
• Add more efficient PE-layout for NOIIAJRA compsets by @JorgSchwinger in #615
• New default configuration for iHAMOCC by @JorgSchwinger in #619
• Modification to reference density modification by @matsbn in #620
• Fix restart for river2omip by @TimotheeBrgs in #622
• Ensure consistent sigma variable in BLOM and iHAMOCC output. by @matsbn in #624
• Changed namelist parameter RHISCF by @matsbn in #623

Full Changelog: v1.8.0...v1.10.0

v1.8.0

This release is prepared for noresm3_0_alpha01.
This release is also backwards compatible with the infrastructure for NorESM2.3.

The v1.8.0 release brings in a new standard for generation of rpointers, that includes timestamps to facilitate the use of different sets of rpointers files.

What's Changed

• Bring rpointer changes to BLOM by @mvdebolskiy in #513

New Contributors

• @mvdebolskiy made their first contribution in #513

Full Changelog: v1.7.2...v1.8.0

v1.7.2

This release is intended as default BLOM/iHAMOCC component for NorESM2.5.
This release is also backwards compatible with the infrastructure for NorESM2.3.

• v1.7.2 is a minor update to v1.7.1
• See v1.7.0 release notes for extensive change log.

NOTE:

• v1.7.X is the last release branch that will include the option to run with "cgs" units.
• v1.7.2 retains the rpointer system from NorESM2. This will be updated for NorESM3 in subsequent tags.

What's Changed

• fix bug in acclvl by @jmaerz in #495
• Fix Ncycle by @jmaerz in #496
• Add a CODEOWNERS file to the BLOM repo by @TomasTorsvik in #494
• Fix OpenMP call in mo_read_shelfmask by @TomasTorsvik in #497
• Add iHAMOCC support for dustflux on tnx0.5 by @jmaerz in #490
• Reset dustflx* diagnostic fields at start of ocprod by @TomasTorsvik in #500
• Added alternative pressure gradient force formulation by @matsbn in #491
• Deallocate arrays in mo_netcdf_bgcrw by @TomasTorsvik in #504
• Add river input file for tn0.5v1 grid by @JorgSchwinger in #505
• Introducing optional sediment quality-based remineralization by @jmaerz in #502
• Fix N-cycle coupling by @jmaerz in #506
• Corrected and updated processor layouts for tnx0.5v1 grid. by @matsbn in #507
• Fix sediment diagnostics and sediment quality by @jmaerz in #511
• Add sed_denit to namelist by @jmaerz in #517
• Include additional tests with GNU compiler by @TomasTorsvik in #519

Full Changelog: v1.7.1...v1.7.2

v1.7.1

This release is intended as default BLOM/iHAMOCC component for NorESM2.5.

• v1.7.1 is a bug fix/technical update to v1.7.0
• See v1.7.0 release notes for extensive change log.

What's Changed

• fix long_name attribute length for POC by @jmaerz in #469
• Add Externals_BLOM.cfg file for use with NorESM2.3 by @TomasTorsvik in #471
• Update testdefs, BLOM hybrid is now default by @TomasTorsvik in #484
• Filtering of squared buoyancy frequency and Richardson number by @matsbn in #480
• Provide new N-deposition files and used remapping sh-script by @jmaerz in #486
• Initial version for iHAMOCC restart remapping by @jmaerz in #476
• Enabled parameterized wave forcing of Langmuir mixing. by @matsbn in #481
• Abandon usage of ndep in input files, always read NHx and NOy by @jmaerz in #492
• Ensure non-negative tracer values and conservation by virtual flux correction by @matsbn in #485

Full Changelog: v1.7.0...v1.7.1

v1.6.9

This release is intended as default BLOM/iHAMOCC component for NorESM2.3.

• v1.6.9 is a bug fix update to v1.6.8
• See v1.6.0 release notes for extensive change log.

What's Changed

• Update buildlib for M4AGO, ecosys dependency by @TomasTorsvik in #483

Full Changelog: v1.6.8...v1.6.9

v1.6.8

This release is intended as default BLOM/iHAMOCC component for NorESM2.3.

• v1.6.8 is a technical update to v1.6.7
• See v1.6.0 release notes for extensive change log.

What's Changed

• Update release-1.6 branch by @TomasTorsvik in #475

Full Changelog: v1.6.7...v1.6.8

v1.6.7

This release is intended as default BLOM/iHAMOCC component for NorESM2.3.

• v1.6.7 is a technical update to v1.6.6
• See v1.6.0 release notes for extensive change log.

What's Changed

• Update M4AGO to v1.1.1 (equiv. to dev-1.1.1) by @jmaerz in #468

Full Changelog: v1.6.6...v1.6.7

v1.7.0

This release is intended as default BLOM/iHAMOCC component for NorESM2.5.
This release is also backwards compatible with the infrastructure for NorESM2.3.

Release highlights

• BLOM refactorization
• Include support for 0.5 degree grid resolution

NOTE:

• v1.7.X is the last release branch that will include the option to run with "cgs" units.
• v1.7.X retains the rpointer system from NorESM2. This will be updated for NorESM3 in subsequent tags.

Externals_BLOM.cfg

package	tag
CVMix	v0.98-beta
M4AGO	v1.1.1

Component (updated/not updated) relative to v1.6.1

What's Changed

• refacotorization of blom code by @mvertens in #317
• Disable CI test for macos with openmp by @TomasTorsvik in #359
• new mechanism for configuring noresm to send dms and bromo from ocn -> atm by @mvertens in #360
• bug fixes by @mvertens in #362
• Fix single column compilation issue after BLOM restructuring by @jmaerz in #366
• Hamocc kwrbioz off - enable remin and primary prod throughout full water column by @jmaerz in #367
• Bodner et al. (2023) parameterization for mixed layer restratification by @matsbn in #371
• Corrected some bugs when using MCT by @matsbn in #372
• New ocn2glc capability by @mvertens in #368
• More transparent co2 gas-exchange formulation by @JorgSchwinger in #370
• Fixes having BLOM run with newer version of CMEPS and fixes threading compilation by @mvertens in #374
• add 05degree blom by @mvertens in #377
• Climatology stream checksums only when requested by @matsbn in #381
• Added channel modifications for the tnx0.5v1 grid. by @matsbn in #382
• Improved backward compatibility of restart by @matsbn in #385
• Feature hybrid enhancements 5 by @matsbn in #375
• Include separate testdefs category aux_hamocc_noresm by @TomasTorsvik in #389
• Change M4AGO tag to dev-1.0.1 by @TomasTorsvik in #393
• Remain with cyanobacteria only in euphotic zone. by @jmaerz in #396
• Making preformed tracers optional to enable HR runs without them by @jmaerz in #394
• fix initialization of sedfluxb by @JorgSchwinger in #401
• update dms exchange and simplify file opens by @mvertens in #403
• Arbitrary Lagrangian-Eulerian (ALE) code refactorization by @matsbn in #388
• use only submodules for noresm checkout by @mvertens in #407
• Add glc runoff to blom from cmeps by @mvertens in #408
• replaced imp.load_source with importlib.machinery.SourceFileLoader by @mvertens in #412
• always obtain ndep from datm or cam using cmeps/cdeps by @mvertens in #410
• Introduce if statement in N-deposition also for default iHAMOCC by @jmaerz in #417
• Adjust pkgs meson file for transitioning M4AGO by @jmaerz in #414
• Bugfix DNRA and introduce max_limiter by @jmaerz in #413
• Dust fluxes output and add descriptions in the xml-namelist file by @jmaerz in #420
• Revert setting of use_ARCTIC variable by @TomasTorsvik in #425
• More efficient PE layout for NOINYOC compset by @JorgSchwinger in #391
• Introduce switch dor T- and O2-dependent remineralization by @jmaerz in #424
• Change placement of LTO2depremin switch by @jmaerz in #427
• workaround for upper/lower case issue for namelist entry lTO2depremin by @JorgSchwinger in #429
• Introduce shelf-sea water residence time tracer acc. to Liu et al 2019 by @jmaerz in #426
• Technical git/gitHub update: master branch by @TomasTorsvik in #435
• Remove redundant OMP call by @TomasTorsvik in #422
• Enforce a range of layer interfaces to constant minimum pressure levels for BLOM hybrid vertical coordinate by @matsbn in #432
• New compsets for JRA forcing and fix for PE layout by @JorgSchwinger in #431
• Modified compsets with JRA interannual forcing to use year range 1958-2018 by @matsbn in #437
• Modified setting of vertical coordinate and vertical dimension by @matsbn in #384
• Always allocate shelfmask array by @TomasTorsvik in #441
• minor corrections to new JRA compsets by @JorgSchwinger in #442
• Revert moving hamocc tests to separate directory by @TomasTorsvik in #445
• Add info about branch structure in README.md file by @TomasTorsvik in #447
• Add error message if user_nl_blom includes hash comments by @TomasTorsvik in #451
• Add time attributes to be cdo/xr-conform by @jmaerz in #449
• Add N2 compset for NOINYOC that still uses isopycnic coordinates by @JorgSchwinger in #452
• Update constants K1 and K2 for carbon chemistry by @JorgSchwinger in #446
• Fix CI test system by @TomasTorsvik in #456
• Temperature- and O2-dependent sediment remineralization by @jmaerz in #454
• Increase value of sediment POC degradation constant by @JorgSchwinger in #464
• Fix some namelist parameters for tnx2v1 grid by @JorgSchwinger in #463
• Update M4AGO scheme to version v1.1.1 (equivalent to dev-1.1.1) by @jmaerz in #460
• add git fleximod support to .gitmodules by @jmaerz in #466

Full Changelog: v1.6.1...v1.7.0

v1.6.6

This release is intended as default BLOM/iHAMOCC component for NorESM2.3.

• v1.6.6 is a technical update to v1.6.5
• See v1.6.0 release notes for extensive change log.

What's Changed

• Technical git/gitHub update: release-1.6 branch by @TomasTorsvik in #436
• Revert moving hamocc tests to separate directory by @TomasTorsvik in #444
• Add error message if user_nl_blom includes hash comments by @TomasTorsvik in #450
• Fix CI test system by @TomasTorsvik in #455
• Remove unsupported WW3 tests from aux_blom_noresm by @TomasTorsvik in #457
• Update buildlib, buildlib_2.1, buildlib_2.2 by @TomasTorsvik in #458

Full Changelog: v1.6.5...v1.6.6

v1.4.4

This release maintains backward compatibility with the CMIP6 version of BLOM/iHAMOCC used by NorESM2.

• v1.4.4 is a technical update to v1.4.3
• See v1.4.0 release notes for extensive change log.

What's Changed

• Remove CI test for macOS by @TomasTorsvik in #434
• Revert moving hamocc tests to separate directory by @TomasTorsvik in #443
• Add error message if user_nl_blom includes hash comments by @TomasTorsvik in #448
• R1.4 update ci02 by @TomasTorsvik in #453
• Update buildlib, buildlib_2.1, buildlib_2.2 by @TomasTorsvik in #459

Full Changelog: v1.4.3...v1.4.4