OpenCloning Static Assets

This repository manages and aggregates static assets from various OpenCloning-related repositories. It serves as a centralized location for accessing and serving important data files and resources used across the OpenCloning tools.

https://assets.opencloning.org/

Purpose

This repository collects and organizes static assets from multiple repositories (more to come):

• SnapGene crawler data
• SEVA plasmids index
• Annotated iGEM distribution
• OpenCloning submission data

Building

Just run ./get_assets.py to fetch the latest versions.

The repositories, commits and paths pulled are defined in the versions.json file.

Structure

The build will generate the following directory structure for a static site:

assets/
├── SnapGene_crawler/
│   └── index.json
├── seva_plasmids_index/
│   └── index.json
├── annotated-igem-distribution/
│   ├── results/
│   │   ├── index.json
│   │   └── plasmids/
├── OpenCloning-submission/
│   ├── index.json
│   └── processed/
├── ...
└── index.html

Asset Sources

The assets are pulled from the following repositories at specific commits:

• SnapGene_crawler: Repository for SnapGene data crawling
• seva_plasmids_index: SEVA plasmids database
• annotated-igem-distribution: iGEM distribution data with annotations
• OpenCloning-submission: OpenCloning submission data

Adding new entries

To add a new entry to the versions.json file, you need to add the following information:

• repository: The URL of the repository
• commit: The commit hash to pull
• paths: The paths to pull from the repository

The paths are relative to the repository root.

Deployment

For now, I am just doing manual deployments to netlify. If it gets updated more often, I will set up a CI/CD pipeline.

python get_assets.py
netlify deploy --prod -d assets -s 327e12c8-ca69-44d2-adbc-2ac9cd10b3a2