feat: timeouts

[tristan-f-r]

Adds timeout to algorithms as a demonstration of passing through errors. Closes #316.

Caveats:

• This does not work with singularity (singularity has no docker wait equivalent and to implement timeouts in singularity would probably require constant polling of a detached thread)
• ML requires at least one pathway, and failing pathways can break ML-work. How do we want to handle downstream analysis when errors occur (including in the future heuristic errors?)

[read-the-docs-community]

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