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Neonate segmentation project at NIRAL, UNC, with Dr. Martin Styner.

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AmygNet
AmygNet
 
 
Figures
Figures
 
 
ModelCodes
ModelCodes
 
 
NewModels
NewModels
 
 
NiftyNetModels
NiftyNetModels
 
 
Records
Records
 
 
SiyangNiftyNetFolder/extensions
SiyangNiftyNetFolder/extensions
 
 
Utilities
Utilities
 
 
.gitignore
.gitignore
 
 
Bern_Inf_Test.ipynb
Bern_Inf_Test.ipynb
 
 
Bern_eval.ipynb
Bern_eval.ipynb
 
 
Bern_vis.ipynb
Bern_vis.ipynb
 
 
CNNvis.ipynb
CNNvis.ipynb
 
 
Data_label_stats.ipynb
Data_label_stats.ipynb
 
 
Effect_of_Resampling.ipynb
Effect_of_Resampling.ipynb
 
 
FindShit.ipynb
FindShit.ipynb
 
 
MyNetUtil.ipynb
MyNetUtil.ipynb
 
 
README.md
README.md
 
 
RemovalForJW.ipynb
RemovalForJW.ipynb
 
 
SimpleITK_DataAugmentation.ipynb
SimpleITK_DataAugmentation.ipynb
 
 
SiyangConfig.ini
SiyangConfig.ini
 
 
Untitled.ipynb
Untitled.ipynb
 
 
csv_inspect.ipynb
csv_inspect.ipynb
 
 
csv_recorder.ipynb
csv_recorder.ipynb
 
 
csv_recorder_func.ipynb
csv_recorder_func.ipynb
 
 
data_process.ipynb
data_process.ipynb
 
 
data_process_BernNet.ipynb
data_process_BernNet.ipynb
 
 
data_process_cr_mask.ipynb
data_process_cr_mask.ipynb
 
 
data_process_minimal.ipynb
data_process_minimal.ipynb
 
 
data_process_pretrain.ipynb
data_process_pretrain.ipynb
 
 
data_process_special.ipynb
data_process_special.ipynb
 
 
data_process_trial.ipynb
data_process_trial.ipynb
 
 
data_process_trial_2.ipynb
data_process_trial_2.ipynb
 
 
label_normalization.ipynb
label_normalization.ipynb
 
 
label_normalization_2.ipynb
label_normalization_2.ipynb
 
 
nb_py2_1080.sh
nb_py2_1080.sh
 
 
nn_inference_eval.ipynb
nn_inference_eval.ipynb
 
 
nn_inference_eval_2.ipynb
nn_inference_eval_2.ipynb
 
 
nn_inference_eval_3.ipynb
nn_inference_eval_3.ipynb
 
 
nn_inference_eval_4.ipynb
nn_inference_eval_4.ipynb
 
 
nn_inference_eval_5.ipynb
nn_inference_eval_5.ipynb
 
 
nn_inference_eval_6.ipynb
nn_inference_eval_6.ipynb
 
 
unet_vis.ipynb
unet_vis.ipynb
 
 
unet_vis_2.ipynb
unet_vis_2.ipynb
 
 
unet_vis_3.ipynb
unet_vis_3.ipynb
 
 
unet_vis_Jenny.ipynb
unet_vis_Jenny.ipynb
 
 

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NeonateSeg

Neonate segmentation project at NIRAL, UNC, with Dr. Martin Styner.

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Neonate segmentation project at NIRAL, UNC, with Dr. Martin Styner.

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deep-learning tensorflow unet convolutional-neural-network brain-mri fully-convolutional-network unet-image-segmentation niftynet

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