StochSS · briandrawert · Dec 5, 2022 · Feb 28, 2022 · Feb 28, 2022 · Feb 28, 2022
diff --git a/.github/workflows/update-docs.yml b/.github/workflows/update-docs.yml
@@ -0,0 +1,46 @@
+name: Publish SpatialPy Docs
+
+on:
+  push:
+    branches: [main]
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Initialize environment
+      uses: actions/checkout@v2
+      with:
+        ref: main
+        fetch-depth: 0
+
+    - name: Install Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.7'
+
+    - name: Install Sphinx Dependency
+      run: |
+        python3 -m pip install --upgrade pip
+        python3 -m pip install -U sphinx
+        python3 -m pip install numpy
+        python3 -m pip install -r requirements.txt
+
+    - name: Update the Docs
+      working-directory: docs
+      run: |
+        make build-docs
+
+    - name: Commit Changes
+      working-directory: docs
+      run: |
+        git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"
+        git config --local user.name "github-actions[bot]"
+        make commit-docs
+
+    - name: Push Changes
+      uses: ad-m/github-push-action@master
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        branch: main
diff --git a/docs/Makefile b/docs/Makefile
@@ -84,25 +84,34 @@ autobuild: $(FORMAT)
 clean:
 	rm -rf "$(BUILDDIR)"
 
-publish:
+build-docs:
+	git pull
 	make clean
 	git stash
-	git checkout gh-pages
+	git checkout main
 	make html
+
+commit-docs:
 	-git add -f "$(BUILDDIR)"
-	-git commit -m "Latest build." "$(BUILDDIR)"
-	git push origin gh-pages -f
-	make clean
-	git checkout @{-1}
-	git stash pop
+	-git commit -m "Latest docs build." "$(BUILDDIR)"
 
-publish-release: publish
+publish:
 	make clean
 	git stash
-	git checkout main
+	git pull
+	git checkout staging
 	make html
 	-git add -f "$(BUILDDIR)"
 	-git commit -m "Latest docs build." "$(BUILDDIR)"
+	git push origin staging -f
+	make clean
+	git checkout gh-pages
+	git pull origin staging
+	git push origin gh-pages -f
+	git checkout @{-2}
+	git stash pop
+
+publish-release: build-docs commit-docs
 	git push origin main -f
 	make clean
 	git checkout @{-1}

diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 8b8c7260a070827b00291bef99cea017
+config: aa9a9a3c9380df45ffa4c7a40b7ba182
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/.doctrees/classes/spatialpy.core.doctree b/docs/build/html/.doctrees/classes/spatialpy.core.doctree
diff --git a/docs/build/html/.doctrees/classes/spatialpy.doctree b/docs/build/html/.doctrees/classes/spatialpy.doctree
diff --git a/docs/build/html/.doctrees/classes/spatialpy.solvers.doctree b/docs/build/html/.doctrees/classes/spatialpy.solvers.doctree
diff --git a/docs/build/html/.doctrees/classes/spatialpy.stochss.doctree b/docs/build/html/.doctrees/classes/spatialpy.stochss.doctree
diff --git a/docs/build/html/.doctrees/environment.pickle b/docs/build/html/.doctrees/environment.pickle
diff --git a/docs/build/html/.doctrees/index.doctree b/docs/build/html/.doctrees/index.doctree
diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
@@ -5,14 +5,16 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Overview: module code &#8212; SpatialPy 1.1.0 documentation</title>
+    <title>Overview: module code &#8212; SpatialPy 1.1.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../_static/css/spatialpy_alabaster_customizations.css" />
     <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
     <script src="../_static/jquery.js"></script>
     <script src="../_static/underscore.js"></script>
+    <script src="../_static/_sphinx_javascript_frameworks_compat.js"></script>
     <script src="../_static/doctools.js"></script>
+    <script src="../_static/sphinx_highlight.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
 
@@ -71,7 +73,7 @@ <h3 id="searchlabel">Quick search</h3>
     </form>
     </div>
 </div>
-<script>$('#searchbox').show(0);</script>
+<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -128,7 +130,7 @@ <h1>All modules for which code is available</h1>
       &copy;Copyright (C) 2019-2022.
 
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 4.4.0</a>
+      Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>
       &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
 
     </div>

diff --git a/docs/build/html/_static/_sphinx_javascript_frameworks_compat.js b/docs/build/html/_static/_sphinx_javascript_frameworks_compat.js
@@ -0,0 +1,134 @@
+/*
+ * _sphinx_javascript_frameworks_compat.js
+ * ~~~~~~~~~~
+ *
+ * Compatability shim for jQuery and underscores.js.
+ *
+ * WILL BE REMOVED IN Sphinx 6.0
+ * xref RemovedInSphinx60Warning
+ *
+ */
+
+/**
+ * select a different prefix for underscore
+ */
+$u = _.noConflict();
+
+
+/**
+ * small helper function to urldecode strings
+ *
+ * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
+ */
+jQuery.urldecode = function(x) {
+    if (!x) {
+        return x
+    }
+    return decodeURIComponent(x.replace(/\+/g, ' '));
+};
+
+/**
+ * small helper function to urlencode strings
+ */
+jQuery.urlencode = encodeURIComponent;
+
+/**
+ * This function returns the parsed url parameters of the
+ * current request. Multiple values per key are supported,
+ * it will always return arrays of strings for the value parts.
+ */
+jQuery.getQueryParameters = function(s) {
+    if (typeof s === 'undefined')
+        s = document.location.search;
+    var parts = s.substr(s.indexOf('?') + 1).split('&');
+    var result = {};
+    for (var i = 0; i < parts.length; i++) {
+        var tmp = parts[i].split('=', 2);
+        var key = jQuery.urldecode(tmp[0]);
+        var value = jQuery.urldecode(tmp[1]);
+        if (key in result)
+            result[key].push(value);
+        else
+            result[key] = [value];
+    }
+    return result;
+};
+
+/**
+ * highlight a given string on a jquery object by wrapping it in
+ * span elements with the given class name.
+ */
+jQuery.fn.highlightText = function(text, className) {
+    function highlight(node, addItems) {
+        if (node.nodeType === 3) {
+            var val = node.nodeValue;
+            var pos = val.toLowerCase().indexOf(text);
+            if (pos >= 0 &&
+                !jQuery(node.parentNode).hasClass(className) &&
+                !jQuery(node.parentNode).hasClass("nohighlight")) {
+                var span;
+                var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg");
+                if (isInSVG) {
+                    span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
+                } else {
+                    span = document.createElement("span");
+                    span.className = className;
+                }
+                span.appendChild(document.createTextNode(val.substr(pos, text.length)));
+                node.parentNode.insertBefore(span, node.parentNode.insertBefore(
+                    document.createTextNode(val.substr(pos + text.length)),
+                    node.nextSibling));
+                node.nodeValue = val.substr(0, pos);
+                if (isInSVG) {
+                    var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect");
+                    var bbox = node.parentElement.getBBox();
+                    rect.x.baseVal.value = bbox.x;
+                    rect.y.baseVal.value = bbox.y;
+                    rect.width.baseVal.value = bbox.width;
+                    rect.height.baseVal.value = bbox.height;
+                    rect.setAttribute('class', className);
+                    addItems.push({
+                        "parent": node.parentNode,
+                        "target": rect});
+                }
+            }
+        }
+        else if (!jQuery(node).is("button, select, textarea")) {
+            jQuery.each(node.childNodes, function() {
+                highlight(this, addItems);
+            });
+        }
+    }
+    var addItems = [];
+    var result = this.each(function() {
+        highlight(this, addItems);
+    });
+    for (var i = 0; i < addItems.length; ++i) {
+        jQuery(addItems[i].parent).before(addItems[i].target);
+    }
+    return result;
+};
+
+/*
+ * backward compatibility for jQuery.browser
+ * This will be supported until firefox bug is fixed.
+ */
+if (!jQuery.browser) {
+    jQuery.uaMatch = function(ua) {
+        ua = ua.toLowerCase();
+
+        var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
+            /(webkit)[ \/]([\w.]+)/.exec(ua) ||
+            /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) ||
+            /(msie) ([\w.]+)/.exec(ua) ||
+            ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) ||
+            [];
+
+        return {
+            browser: match[ 1 ] || "",
+            version: match[ 2 ] || "0"
+        };
+    };
+    jQuery.browser = {};
+    jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true;
+}
diff --git a/docs/build/html/_static/basic.css b/docs/build/html/_static/basic.css
@@ -222,7 +222,7 @@ table.modindextable td {
 /* -- general body styles --------------------------------------------------- */
 
 div.body {
-    min-width: 450px;
+    min-width: 360px;
     max-width: 800px;
 }
 
@@ -237,16 +237,6 @@ a.headerlink {
     visibility: hidden;
 }
 
-a.brackets:before,
-span.brackets > a:before{
-    content: "[";
-}
-
-a.brackets:after,
-span.brackets > a:after {
-    content: "]";
-}
-
 h1:hover > a.headerlink,
 h2:hover > a.headerlink,
 h3:hover > a.headerlink,
@@ -334,13 +324,15 @@ aside.sidebar {
 p.sidebar-title {
     font-weight: bold;
 }
-
+nav.contents,
+aside.topic,
 div.admonition, div.topic, blockquote {
     clear: left;
 }
 
 /* -- topics ---------------------------------------------------------------- */
-
+nav.contents,
+aside.topic,
 div.topic {
     border: 1px solid #ccc;
     padding: 7px;
@@ -379,13 +371,17 @@ div.body p.centered {
 
 div.sidebar > :last-child,
 aside.sidebar > :last-child,
+nav.contents > :last-child,
+aside.topic > :last-child,
 div.topic > :last-child,
 div.admonition > :last-child {
     margin-bottom: 0;
 }
 
 div.sidebar::after,
 aside.sidebar::after,
+nav.contents::after,
+aside.topic::after,
 div.topic::after,
 div.admonition::after,
 blockquote::after {
@@ -428,10 +424,6 @@ table.docutils td, table.docutils th {
     border-bottom: 1px solid #aaa;
 }
 
-table.footnote td, table.footnote th {
-    border: 0 !important;
-}
-
 th {
     text-align: left;
     padding-right: 5px;
@@ -614,20 +606,26 @@ ol.simple p,
 ul.simple p {
     margin-bottom: 0;
 }
-
-dl.footnote > dt,
-dl.citation > dt {
+aside.footnote > span,
+div.citation > span {
     float: left;
-    margin-right: 0.5em;
 }
-
-dl.footnote > dd,
-dl.citation > dd {
+aside.footnote > span:last-of-type,
+div.citation > span:last-of-type {
+  padding-right: 0.5em;
+}
+aside.footnote > p {
+  margin-left: 2em;
+}
+div.citation > p {
+  margin-left: 4em;
+}
+aside.footnote > p:last-of-type,
+div.citation > p:last-of-type {
     margin-bottom: 0em;
 }
-
-dl.footnote > dd:after,
-dl.citation > dd:after {
+aside.footnote > p:last-of-type:after,
+div.citation > p:last-of-type:after {
     content: "";
     clear: both;
 }
@@ -644,10 +642,6 @@ dl.field-list > dt {
     padding-right: 5px;
 }
 
-dl.field-list > dt:after {
-    content: ":";
-}
-
 dl.field-list > dd {
     padding-left: 0.5em;
     margin-top: 0em;