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fix: importModel reads model notes #587

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Merged
edkerk merged 1 commit into from
Sep 4, 2025
Merged

fix: importModel reads model notes #587

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4 changes: 2 additions & 2 deletions doc/io/importModel.html
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Original file line number Diff line number Diff line change
Expand Up @@ -852,8 +852,8 @@ <h2><a name="_source"></a>SOURCE CODE <a href="#_top"><img alt="^" border="0" sr
0742 startString=strfind(modelSBML.notes,<span class="string">'xhtml&quot;&gt;'</span>);
0743 endString=strfind(modelSBML.notes,<span class="string">'&lt;/body&gt;'</span>);
0744 <span class="keyword">if</span> any(startString) &amp;&amp; any(endString)
0745 model.annotation.note=modelSBML.notes(startString+7:endString-1);
0746 model.annotation.note=regexprep(model.annotation.note,<span class="string">'&lt;p&gt;|&lt;/p&gt;'</span>,<span class="string">''</span>);
0745 model.annotation.note=modelSBML.notes(startString(1)+7:endString-1);
0746 model.annotation.note=regexprep(model.annotation.note,<span class="string">'&lt;p.*?&gt;|&lt;/p.*?&gt;'</span>,<span class="string">''</span>);
0747 model.annotation.note=strtrim(model.annotation.note);
0748 <span class="keyword">if</span> regexp(model.annotation.note,<span class="string">'This file was generated using the exportModel function in RAVEN Toolbox \d\.\d and OutputSBML in libSBML'</span>)
0749 model.annotation=rmfield(model.annotation,<span class="string">'note'</span>); <span class="comment">% Default note added when running exportModel</span>
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4 changes: 2 additions & 2 deletions io/importModel.m
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Original file line number Diff line number Diff line change
Expand Up @@ -742,8 +742,8 @@
startString=strfind(modelSBML.notes,'xhtml">');
endString=strfind(modelSBML.notes,'</body>');
if any(startString) && any(endString)
model.annotation.note=modelSBML.notes(startString+7:endString-1);
model.annotation.note=regexprep(model.annotation.note,'<p>|</p>','');
model.annotation.note=modelSBML.notes(startString(1)+7:endString-1);
model.annotation.note=regexprep(model.annotation.note,'<p.*?>|</p.*?>','');
model.annotation.note=strtrim(model.annotation.note);
if regexp(model.annotation.note,'This file was generated using the exportModel function in RAVEN Toolbox \d\.\d and OutputSBML in libSBML')
model.annotation=rmfield(model.annotation,'note'); % Default note added when running exportModel
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