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This Wiki contains information/code for high throughput sequencing experiments in the laboratories of Dr. Boris Tabakoff and Dr. Paula Hoffman.

Pipeline Documentation

By Sample Summary of RNASeq Data
Summary of Current Status of Long RNA
Rn6 General Small RNA feature generation

Rn6 Small RNA Summary

Meeting Minutes

Rat Brain

Rn5 - Brain Previous Versions (includes other batches/samples not yet updated to Rn6)

Rn6 - Brain

1. BNLx and SHR - From Printz 1. Rn6 BNLx and SHR Brain Total RNA - Males 2. Rn6 BNLx and SHR Brain PolyA RNA - Males 3. Rn6 BNLx and SHR Brain Small RNA - Males - Rn6 General Small RNA feature generation
2. HXB/BXH Recombinant Inbred Panel - From Pravenec 1. Total RNA - Males
   • Rn6 HXB BXH RI Panel Brain Batch 1 (Total RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 2 (Total RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 3 (Total RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 4 (Total RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 5 (Total RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 6 (Total RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 7 (Total RNA)
   • Rn6 Inbred Panel Brain Batch 8 (Total RNA)
   • Rn6 Inbred Panel Brain Batch 9 (Total RNA) 2. Total RNA - Females
   • Rn6 BNLx and SHR Female Brain Total RNA 3. Small RNA - Males
   • Rn6 HXB BXH RI Panel Brain Batch 1 (small RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 2 (small RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 3 (small RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 4 (small RNA)
   • Rn6 HXB BXH RI Panel Brain Batch 5 (small RNA)

Rat Liver

Rn5 - Liver Previous Versions (includes other batches/samples not yet updated to Rn6)

Rn6 - Liver

1. BNLx and SHR Liver - From Printz 1. Rn6 BNLx and SHR Liver Total RNA From UCD - Males 2. Rn6 BNLx and SHR Liver Small RNA - Males - Rn6 General Small RNA feature generation
2. HXB/BXH Recombinant Inbred Panel - From Pravenec 1. Total RNA - Males
   1. Rn6 HXB BXH RI Panel Liver Batch 1 (total RNA)
   2. Rn6 HXB BXH RI Panel Liver Batch 2 (total RNA)
   3. Rn6 HXB BXH RI Panel Liver Batch 3 (total RNA)
   4. Rn6 HXB BXH RI Panel Liver Batch 4 (total RNA)
   5. Rn6 HXB BXH RI Panel Liver Batch 5 (total RNA)
   6. Rn6 HXB BXH RI Panel Liver Batch 6 (total RNA)
   7. Rn6 HXB BXH RI Panel Liver Batch 7 (total RNA)
   8. Rn6 HXB BXH RI Panel Liver Batch 8 (total RNA)
   9. Rn6 HXB BXH RI Panel Liver Batch 9 (total RNA) 2. Small RNA - Males
   10. Rn6 HXB BXH RI Panel Liver Batch 1 (small RNA)
   11. Rn6 HXB BXH RI Panel Liver Batch 2 (small RNA)
   12. Rn6 HXB BXH RI Panel Liver Batch 3 (small RNA)
   13. Rn6 HXB BXH RI Panel Liver Batch 4 (small RNA)
   14. Rn6 HXB BXH RI Panel Liver Batch 5 (small RNA)
   15. Rn6 HXB BXH RI Panel Liver Batch 6 (small RNA)
   16. Rn6 HXB BXH RI Panel Liver Batch 7 (small RNA)

Rat Heart (Left Ventricle)

1. HXB/BXH Recombinant Inbred Panel - From Pravenec
2. BNLx and SHR Heart total RNA - Males
3. BNLx and SHR Heart Small RNA - Males

Rn6 - Heart

1. HXB/BXH Recombinant Inbred Panel - From Pravenec
2. Rn6 BNLx and SHR Heart total RNA - Males
3. Rn6 BNLx and SHR Heart Small RNA - Males - Rn6 General Small RNA feature generation

Mouse Brain

1. ILS and ISS - bred at UCD
2. ILS and ISS Brain Total RNA
3. Small RNA