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pre-allocate ndarrayfor Seq2VecBase caller #29

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pre-allocate ndarrayfor Seq2VecBase caller #29

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10 changes: 6 additions & 4 deletions seq2vec/model/seq2vec_base.py
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Original file line number Diff line number Diff line change
Expand Up @@ -27,10 +27,12 @@ def __call__(self, seqs):
Raises
------
"""
result = []
for seq in seqs:
result.append(self.transform_single_sequence(seq))
return np.array(result)
n_seqs = len(seqs)
result = np.zeros((n_seqs, self.latent_size), dtype=np.float32)

for idx, seq in enumerate(seqs):
result[idx, :] = self.transform_single_sequence(seq)
return result

@abstractmethod
def transform_single_sequence(self, seq):
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