Pre-processed data

All pre-processed data are available here in the form of readily-for-analysis for researchers to develop new methods.

• human_cell_atlas.7z contains 198 csv files involving 562,977 cells and 56 tissues from HCL
• mouse_cell_atlas.7z contains 126 csv files involving 201,764 cells and 32 tissues from MCA
• human_test_data.7z contains 54 csv files involving 130,885 cells and 10 tissues.
• mouse_test_data.7z contains 128 csv files involving 134,604 cells and 12 tissues.

Note

Each dataset contains two csv files.

• _data.csv file contains single-cell gene expression data matrix, wherein the first column represents gene names and the first row represents cell id.
• _celltype.csv file contains cell type information for each cell, wherein the first column represents cell id and the second column represents the cell type.

scDeepSort python package

Release Python package of scDeepSort