Quantifying small-scale rut development on gravel forest roads using digital elevation modeling (DEM) differencing.
Download and install Miniconda
After installing Miniconda set up Mamba (optional but recommended)
$ conda install mamba -n base -c conda-forge
Clone the repo and set up the conda environment
$ git clone https://github.com/amanaster2/micro_diff.git
$ cd ./micro_diff
$ mamba env create -f micro_diff_env.yml
$ conda activate micro_diff
$ pip install -e .
notebooks contains step-by-step Jupyter notebooks to analyze rut development
micro contains .py files that contain functions for streamlining of code
-
Run
clip_rasters.ipynb -
Run
coregistration.ipynb -
Run
raster_analysis.ipynb -
Run
stats.ipynb -
Move to ll_micro and follow steps in that
README.md.
- Run
flow_pathway_analysis.ipynb