testElectrodePointCloudModelEstimate

test/suite/testElectrodePointCloudModelEstimate.m

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+% The PaCER Toolbox: testElectrodePointCloudModelEstimate.m
+%
+% Purpose:
+%     - test the electrodePointCloudModelEstimate function
+%
+% Author:
+%     - Loic Marx, June 2019
+
+global refDataPath
+global inputDataPath
+
+% save the current path
+currentDir = pwd;
+
+% initialize the test
+fileDir = fileparts(which(mfilename));
+cd(fileDir);
+
+% load the input arguments (obtained from function PaCER implemented only with CT_POSTOP_with_XML.nii.gz)
+electrodePointCloudModelEstimate_inputs = load([inputDataPath filesep 'input_ElectrodePointCloudModelEstimate.mat']);
+
+% setup tolerence value for comparison
+tol = 1e-6; 
+
+% test if nargin < 2 
+%load reference data 
+refData_elecPointCloudMm = load('refData_testElectrodePointCloudModelEstimate_elecPointCloudMm.mat');
+
+% generate the new output 
+[r3polynomial_new, tPerMm_new, skeleton_new, totalLengthMm_new] = electrodePointCloudModelEstimate(electrodePointCloudModelEstimate_inputs.elecPointCloudMm);
+
+% compare the reference data and the new outputs
+assert(norm(r3polynomial_new - refData_elecPointCloudMm.r3polynomial_ref) < tol)
+assert(norm(tPerMm_new - refData_elecPointCloudMm.tPerMm_ref) < tol)
+assert(norm(skeleton_new - refData_elecPointCloudMm.skeleton_ref) < tol)
+assert(norm(totalLengthMm_new - refData_elecPointCloudMm.totalLengthMm_ref) < tol)
+
+% generate the new output if nargin = 2
+[r3polynomial_var1_new, tPerMm_var1_new, skeleton_var1_new, totalLengthMm_var1_new] = electrodePointCloudModelEstimate(electrodePointCloudModelEstimate_inputs.elecPointCloudMm, electrodePointCloudModelEstimate_inputs.varargin{1, 1});
+
+
+% compare the reference data and the new outputs
+assert(norm(r3polynomial_var1_new - refData_elecPointCloudMm.r3polynomial_var1_ref) < tol)
+assert(norm(tPerMm_var1_new - refData_elecPointCloudMm.tPerMm_var1_ref) < tol)
+assert(norm(skeleton_var1_new - refData_elecPointCloudMm.skeleton_var1_ref) < tol)
+assert(norm(totalLengthMm_var1_new - refData_elecPointCloudMm.totalLengthMm_var1_ref) < tol)
+
+% generate the new output if nargin = 3
+[r3polynomial_var2_new, tPerMm_var2_new, skeleton_var2_new, totalLengthMm_var2_new] = electrodePointCloudModelEstimate(electrodePointCloudModelEstimate_inputs.elecPointCloudMm, electrodePointCloudModelEstimate_inputs.varargin{1, 1}, electrodePointCloudModelEstimate_inputs.varargin{1, 2});
+
+% compare the reference data and the new outputs
+assert(norm(r3polynomial_var2_new - refData_elecPointCloudMm.r3polynomial_var2_ref) < tol)
+assert(norm(tPerMm_var2_new - refData_elecPointCloudMm.tPerMm_var2_ref) < tol)
+assert(norm(skeleton_var2_new - refData_elecPointCloudMm.skeleton_var2_ref) < tol)
+assert(norm(totalLengthMm_var2_new - refData_elecPointCloudMm.totalLengthMm_var2_ref) < tol)
+
+% capture the warning message when nargin < 2 
+warningMessage = 'No Reference image for intensity weighting given! Accuracy is thus limited to voxel size!';
+assert(verifyFunctionWarning('electrodePointCloudModelEstimate', warningMessage, 'inputs', {electrodePointCloudModelEstimate_inputs.elecPointCloudMm}));
+
+% use another input argument to test error message 
+[r3polynomial_error_new, tPerMm_error_new, skeleton_error_new, totalLengthMm_error_new] = electrodePointCloudModelEstimate(refData_elecPointCloudMm.elecPointCloudMm_error);
+
+% compare the reference data and the new outputs
+assert(norm(r3polynomial_error_new - refData_elecPointCloudMm.r3polynomial_error_ref) < tol)
+assert(norm(tPerMm_error_new - refData_elecPointCloudMm.tPerMm_error_ref) < tol)
+assert(norm(skeleton_error_new - refData_elecPointCloudMm.skeleton_error_ref) < tol)
+assert(norm(totalLengthMm_error_new - refData_elecPointCloudMm.totalLengthMm_error_ref) < tol)
+
+% capture the warning message if ~(length(zPlanes) < length(elecPointCloudMm))
+warningMessage = 'CT planes in Z direction are not exactly aligned. Trying with 0.1 mm tolerance';
+assert(verifyFunctionWarning('electrodePointCloudModelEstimate', warningMessage, 'inputs', {refData_elecPointCloudMm.elecPointCloudMm_error}));
+
+% change back to the current directory
+cd(currentDir);