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Welcome to the molstar wiki!

ㅎრას ფროტონებო?

https://aibolem.github.io/molstar/dev/illumination/themass%26photonf/The_mass_of_the_photon.pdf

lokalt: L:/WEBB_OFFLINE/chem/emolviewer

L:\Clones_github\3d3emolstar\

https://aibolem.github.io/molstar/

https://aibolem.github.io/molstar/viewer/

https://aibolem.github.io/molstar/demos/lighting/

https://aibolem.github.io/molstar/demos/ihm-restraints/index.html

whole cartoon series at kinase story; just click play button & enjoy uPp to 11 frames

there are other storys too on right uPper side, in dropdown menu

https://aibolem.github.io/molstar/demos/mvs-stories/index.html?story=kinase

https://aibolem.github.io/molstar/demos/alpha-orbitals/index.html

need look uPp

https://aibolem.github.io/molstar/viewer-docs

https://molstar.org/viewer-docs/

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molx

viewer url + ?snapshot-url=

https://aibolem.github.io/molstar/viewer/?snapshot-url=

• url of molx file for example: zikaem.molx

https://aibolem.github.io/molstar/demos/states/

&& +

&snapshot-url-type=molx

so we get long link, there we can change file name from repositoriets file list lokated @:

https://github.com/aibolem/molstar/tree/master/demos/states

https://aibolem.github.io/molstar/viewer/?snapshot-url=https://aibolem.github.io/molstar/demos/states/zikaem.molx&snapshot-url-type=molx

3D Controls

Rotate Drag using left mouse button or Rotate around z-axis (roll) Drag using left mouse button + control key + shift key Pan Drag using right mouse button or left mouse button + control key Focus Drag using three fingers Focus and zoom Drag using wheel/middle mouse button Zoom Scroll using wheel/middle mouse button Clip Scroll using wheel/middle mouse button + shift key Move forward Press w or gamepad up Move back Press s or gamepad down Move left Press a Move right Press d Move up Press r Move down Press f Roll left Press q Roll right Press e Pitch up Press arrow up + shift key Pitch down Press arrow down + shift key Yaw left Press arrow left + shift key Yaw right Press arrow right + shift key Boost move Press shift left Enable pointer lock Press space + control key

massor av installingar på vänster sidan.

that what we see in the middle of the molecule

motor-hook.molx

https://aibolem.github.io/molstar/viewer/?snapshot-url=https://aibolem.github.io/molstar/demos/states/motor-hook.molx&snapshot-url-type=molx

Intra-chain restraints

An MD snapshot of cellohexaose chain with restraints inducing two kinds of intrachain HB's: O3-H· · · O5 and O2-H· · · O6. All such HB's are represented by dashed lines. The O and C atoms are in red and gray colors respectively.

https://aibolem.github.io/molstar/mol-view-spec/index.html

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.mvsj

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more examples @ https://github.com/aibolem/molstar/tree/master/mol-view-spec/examples

https://aibolem.github.io/molstar/viewer

?mvs-url=

then link with one of example .mvsj file name

https://aibolem.github.io/molstar/mol-view-spec/examples/basic/state.mvsj

and

&mvs-format=mvsj&hide-controls=1

so we get next long link:

https://aibolem.github.io/molstar/viewer?mvs-url=https://aibolem.github.io/molstar/mol-view-spec/examples/basic/state.mvsj&mvs-format=mvsj&hide-controls=1

then volume and segmentations with live examples, just click on them

https://aibolem.github.io/molstar/volumes-and-segmentations/index.html

or buil link on that way with outher file url

https://aibolem.github.io/molstar/molstar-volseg/index.html?cvsx-url=https://rawcdn.githack.com/molstar/molstar-volseg/2c677ab0f1b7b7d27f292e0bd209de83e732d216/vs_toolkit/sample_cvsx/emd-1832.cvsx

Mesoscale exploreer

https://aibolem.github.io/molstar/me/index.html

on https://aibolem.github.io/molstar/ we have more links wit Visual Studio coder extensions like that, with long description

"dzama lee ИА iЯА" = 'Arian Jamasb (badge of "gan" modeled geschichtes by G.C.U. Geo ComPOSARC Unioჼ, sience 928 A.C. (ja, und keine sorge! astro satelites existes allways, sience first ones arrived, untill they preparate h²o or O² etc ... untill peoples or puples arrival ...

https://marketplace.visualstudio.com/items?itemName=ArianJamasb.protein-viewer

ㅎAbout PhOтОнი мАсс

2. General theory of massive photon electromagnetism

Electromagnetic phenomena in vacuum are characterized by two three-dimensional vector fields, the electric and magnetic fields, E(x,t) and B(x,t), which are subject to Maxwell’s equations and which can also be thought of as the classical limit (limit in large quantum numbers) of a quantum mechanical description in terms of photons. The photon mass is ordinarily assumed to be exactly zero in Maxwell’s electromagnetic field theory, which is based on gauge invariance. If gauge invariance is abandoned, a mass term can be added to the Lagrangian density for the electromagnetic field in a unique way (Greiner and Reinhardt 1996):

L = − 1 4µ0 FµνF µν − jµAµ + µ2 γ 2µ0 AµAµ, (2.1) where µ−1

γ is a characteristic length associated with the photon rest mass, Aµ and jµ are the four-dimensional vector potential (A, iφ/c) and four-dimensional vector current density (J, icρ), with φ and A denoting the scalar and vector potentials, and ρ and J are the charge and current densities, respectively. µ0 is the permeability constant of free space and Fµν is the antisymmetric field strength tensor. It is connected to the vector potential through Fµν = ∂Aν ∂xµ − ∂Aµ ∂xν . (2.2) The variation of Lagrangian density with respect to Aµ yields the Proca equation (Proca 1930a,b,c, 1931, 1936a,b,c,d, 1937, 1938, de Broglie 1940): ∂Fµν ∂xν

• µ2 γ Aµ = µ0Jµ. (2.3) Substituting equation (2.2) into (2.3), we obtain the wave equation of the Proca vector field Aµ: ( − µ2 γ )Aµ = −µ0Jµ, (2.4) where the d’Alembertian symbol is shorthand for ∇2 − ∂2/∂(ct)2. In free space, equation (2.4) reduces to ( − µ2 γ )Aµ = 0, (2.5) which is essentially the Klein–Gordon equation for the photon. The parameter µγ could be interpreted as the photon rest mass mγ , with mγ = µγ h¯ c