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【Installation Instructions】

Status: Open.

#11 In amcpherson/citup;

· xiucz opened on Sep 18, 2025

Can only one tumor sample infer clonality using citup?

Status: Open.

#10 In amcpherson/citup;

· DayTimeMouse opened on Jul 19, 2024

CommandLineException: Command 'citupqip' with return code -6

Status: Open.

#9 In amcpherson/citup;

· THZ34 opened on Feb 26, 2024

How can I get the mutation list of each clone estimated from the results.h5 file?

Status: Open.

#8 In amcpherson/citup;

· biosunsci opened on Sep 6, 2023

Runing citup: pypeliner.scheduler - ERROR - exception

Status: Open.

#7 In amcpherson/citup;

· EsterAH89 opened on Jul 25, 2023

fewer clones in cluster_assignment than clone_freq

Status: Open.

#6 In amcpherson/citup;

· jamelee opened on Mar 23, 2023

Unencumbered version please

Status: Open.

#5 In amcpherson/citup;

· delocalizer opened on Nov 10, 2022

Can't update citup

Status: Open.

#3 In amcpherson/citup;

· ivan108 opened on Apr 9, 2021

tree_solution in results store

Status: Open.

#1 In amcpherson/citup;

· mmaitenat opened on Nov 25, 2019