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0b7b939
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RichardScottOZ May 26, 2023
968dd59
space
RichardScottOZ May 26, 2023
677ab49
space
RichardScottOZ May 26, 2023
8e2156a
space
RichardScottOZ May 26, 2023
f5516b4
space
RichardScottOZ May 26, 2023
2dce666
space
RichardScottOZ May 26, 2023
f9e7f17
space
RichardScottOZ May 26, 2023
346acf5
space
RichardScottOZ May 26, 2023
7c62d4b
space
RichardScottOZ May 26, 2023
f844af5
space
RichardScottOZ May 26, 2023
e13a706
test-choosy
RichardScottOZ May 27, 2023
631f0c4
Initial plan
Copilot Jan 11, 2026
4616a54
Add modern infrastructure: config, CLI, improved models, docs
Copilot Jan 11, 2026
a810c3e
Add examples directory and contributing guide
Copilot Jan 11, 2026
f4b346b
Fix code review issues: entry points, mixed precision, imports
Copilot Jan 11, 2026
cb8713a
Add implementation summary - Project modernization complete
Copilot Jan 11, 2026
c6277df
Add comprehensive post-processing module with clustering integration
Copilot Jan 11, 2026
8ae1657
Add comprehensive pipeline coverage analysis and integration bridge
Copilot Jan 11, 2026
e971e65
Merge pull request #1 from RichardScottOZ/copilot/enhance-user-friend…
RichardScottOZ Jan 11, 2026
65ae394
Initial plan
Copilot Jan 13, 2026
0748af2
Add detailed specifications for data loading and rotation improvements
Copilot Jan 13, 2026
516fe9d
Implement data loading and rotation augmentation integration
Copilot Jan 13, 2026
1ed4b72
Update CLI with augmentation options and add quick start guide
Copilot Jan 13, 2026
8eebee4
Fix code review issues: simplify rotation, add validation warnings, f…
Copilot Jan 13, 2026
31bd2d9
Merge pull request #2 from RichardScottOZ/copilot/improve-data-loadin…
RichardScottOZ Jan 13, 2026
dc84864
Initial plan
Copilot Jan 13, 2026
55807d5
Add comprehensive .mat to PyData conversion documentation and utilities
Copilot Jan 13, 2026
1b8a6c9
Fix mat_converter kwarg filtering and verify all functionality
Copilot Jan 13, 2026
a018ae9
Address code review feedback
Copilot Jan 13, 2026
317f287
Merge pull request #3 from RichardScottOZ/copilot/add-documentation-f…
RichardScottOZ Jan 14, 2026
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125 changes: 125 additions & 0 deletions .gitignore
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# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# Virtual environments
venv/
env/
ENV/
env.bak/
venv.bak/

# IDE
.vscode/
.idea/
*.swp
*.swo
*~
.DS_Store

# Jupyter Notebook
.ipynb_checkpoints
*.ipynb_checkpoints/

# Testing
.pytest_cache/
.coverage
htmlcov/
.tox/
.nox/
.hypothesis/

# Type checking
.mypy_cache/
.dmypy.json
dmypy.json
.pyre/

# Model files (large)
*.h5
*.hdf5
*.pb
*.ckpt
*.keras
*.weights
*.pth
*.pt

# Data files (large)
*.mat
*.npz
*.npy

# Results and outputs
Results/
Figures/
Pmaps/
models/
logs/
*.png
*.jpg
*.jpeg
!InputLayers.png
!Model.png
!AppletDemo.png

# Temporary files
temp.py
Temp.png
TMP*.png
/tmp/
*.tmp
*.temp

# Callbacks and checkpoints
CallBacks/
checkpoints/

# Dataset directories (large)
Dataset/
DSREADY/
Filters/

# TensorBoard logs
events.out.tfevents.*

# Legacy files
*.pyc

# Documentation build
docs/_build/
site/

# OS
Thumbs.db
.DS_Store

# Project-specific
applet_images/cluster/
Curves.npy
*.csv
training_history.csv

# But keep the directory structures
!.gitkeep
88 changes: 88 additions & 0 deletions CHANGELOG.md
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# Changelog

All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [2.0.0] - 2026-01-11

### Added
- Modern TensorFlow 2.x/Keras support (replacing legacy Keras)
- Multiple model architectures: RotateNet (improved), U-Net, ResNet
- CLI interface with subcommands for train, predict, evaluate, export
- JSON-based configuration system with dataclasses
- `requirements.txt` for dependency management
- `setup.py` for proper package installation
- Type hints throughout the codebase
- Batch normalization and dropout support
- Mixed precision training support
- Early stopping and learning rate scheduling
- TensorBoard integration for training visualization
- Model checkpointing with best model selection
- CSV logging for training history
- Modern README with comprehensive documentation
- Configuration validation
- Support for multiple optimizers
- Advanced metrics (precision, recall, AUC)
- Model export capabilities (planned)

### Changed
- Modernized model architecture with flexible design
- Improved code organization and modularity
- Updated documentation with modern examples
- Enhanced error handling and validation
- Better separation of concerns (config, model, training, inference)
- Improved naming conventions and code style

### Improved
- Training pipeline with modern callbacks
- Configuration management system
- User experience with CLI tools
- Documentation and examples
- Code maintainability and readability

### Technical Debt Addressed
- Removed hardcoded global variables in favor of configuration
- Separated model definition from training logic
- Added proper Python package structure
- Improved import organization
- Better path handling (preparing for pathlib migration)

### Future Plans
- Add comprehensive test suite
- Create Jupyter notebook examples
- Add Gradio/Streamlit web UI
- Implement data loading pipeline
- Add ONNX/TensorFlow Lite export
- Docker containerization
- Cloud deployment guides
- Add attention mechanisms
- Implement transfer learning

## [1.0.0] - 2018

### Initial Release
- Original RotateNet architecture for lineament detection
- Training and inference scripts
- TKinter GUI applet
- Support for 8-layer geophysical data
- DBSCAN clustering for post-processing
- Line and curve fitting algorithms
- Visualization tools
- Support for rotation-based data augmentation
- Probability map generation
- Basic evaluation metrics

---

### Version Numbering

- **Major version**: Significant architectural changes or API breaking changes
- **Minor version**: New features, non-breaking changes
- **Patch version**: Bug fixes, minor improvements

### Links

- [Original Thesis](http://hdl.handle.net/2429/68438)
- [GitHub Repository](https://github.com/RichardScottOZ/LineamentLearning)
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