Updated Mahti compile and submit scripts.

cineca-leonardo/compile-cpu.sh

@@ -1 +1,5 @@
-#TBD
+#!/bin/bash
+
+module load hdf5/1.14.3--intel-oneapi-mpi--2021.10.0--oneapi--2023.2.0 intel-oneapi-compilers
+make clean
+make ascot5_main -j 8 MPI=1 FLAGS="-lhdf5_hl -vecabi=cmdtarget -qno-openmp-offload -diag-disable 3180,10441,10006"

csc-mahti/compile-cpu.sh

@@ -3,6 +3,9 @@
 # Make the following change in the Makefile first
 # -       CFLAGS += -shlib
 # +       CFLAGS += -shared
+#
+# With the above change the code compiles but will segfault when running.
+# Instead, comment out the above line.
 module purge
 module load aocc mpich hdf5/1.10.7-mpi
 make clean

csc-mahti/submit-cpu.sh

@@ -15,6 +15,7 @@ module load aocc mpich hdf5/1.10.7-mpi
 
 export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
 export FOR_PRINT=$SLURM_JOB_ID.stdout
+export HDF5_USE_FILE_LOCKING=FALSE
 
 echo Job name $SLURM_JOB_NAME
 echo Job id $SLURM_JOB_ID

csc-mahti/submit-gpu.sh

@@ -15,6 +15,7 @@
 module load .unsupported nvhpc/22.3
 
 export FOR_PRINT=$SLURM_JOB_ID.stdout
+export HDF5_USE_FILE_LOCKING=FALSE #Untested for gpu but this was needed for cpu
 
 echo Job name $SLURM_JOB_NAME
 echo Job id $SLURM_JOB_ID