Prodigal v2.6.3 https://github.com/hyattpd/Prodigal
Glimmer v3.02b http://ccb.jhu.edu/software/glimmer/index.shtml
MGA (MetaGeneAnnotator) 2008/8/19 http://metagene.nig.ac.jp/
GeneMark v2.5m GeneMarkS v4.6b GeneMarkS2 v1.10 http://exon.gatech.edu/GeneMark/
cd-hit v4.8.1 http://weizhongli-lab.org/cd-hit/
ELPH (Estimated Locations of Pattern Hits) v1.0.1 https://cbcb.umd.edu/software/ELPH/
argparse v1.4.0
BioPython v1.72
glob
os
pandas v0.24.1
subprocess
functools
Include ARAGORN the tRNA caller
Include gggenes for gene annotation
Include contigs name in DF as this is needed with multi-contig FASTA files