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1. wf-paired-end-illumina-assembly wf-paired-end-illumina-assembly Public

   pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data

   Nextflow 11 11

2. wf-ani wf-ani Public

   workflow for computing Average Nucleotide Identity (ANI) between FastA and GenBank files

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3. wf-assembly-snps wf-assembly-snps Public

   general workflow for genome assembly-based SNP phylogeny with optional recombination masking

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4. genomics_scripts genomics_scripts Public

   miscellaneous genomics scripts for fetching, parsing, and summarizing genomic data

   Python 3

5. leptospira_type_strains leptospira_type_strains Public

   summary data, scripts, and workflows for all species type strains in the bacterial genus Leptospira

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6. test-datasets test-datasets Public

   Forked from nf-core/test-datasets

   Test data to be used for automated testing with the nf-core pipelines