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Vladimir Gainullin edited this page Sep 17, 2016 · 2 revisions

Welcome to the project-VSP wiki!

Short term goals:

  1. make R scripts callable through command line interface: | transcript name ENST |

  2. Integrate in-silico prediction tool - keep PROTEAN by default, (see what else can be computed locally, or through web ). This will use the current python script to convert variant names into PROVEAN. Could also store the results locally and check if these are already available?

  3. Check other candidate y- dimension (BLOSUM62, Align_GVGD etc)

  4. Label image files with x-,y-,z- , maybe be able to integrate protein domains?

Long term goals:

  1. Convert scripts into R Shiny app.

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