Source code for MIOSTONE: Modeling microbiome-trait associations with taxonomy-adaptive neural networks
Please unzip the data.tar.xz file and put the data directory in the same directory as the src directory.
An example jupyter notebook is provided in the example directory. Please follow the instructions in the notebook to run MIOSTONE on the example dataset.
Required packages are listed in environment.yml. You can create a conda environment with the following command:
conda env create -f environment.yml