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bhklab / AnnotationGx Public

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feat: include_query and name mapping in cellosaurus#66

Merged

mtran-code merged 18 commits intomainbhklab/AnnotationGx:mainfrom

mtran/cellosaurus-33bhklab/AnnotationGx:mtran/cellosaurus-33Copy head branch name to clipboard

Oct 21, 2025

Conversation Commits18 (18)Checks Files changed

Merged

feat: include_query and name mapping in cellosaurus#66
mtran-code merged 18 commits intomainfrom
mtran/cellosaurus-33

Commits

Commits on Oct 21, 2025

feat: add include_query support to mapCell2Accession
mtran-code
committed
style: format cellosaurus code
mtran-code
committed
docs: roxygenize
mtran-code
committed
refactor: tighten build_cellosaurus_request validation
mtran-code
committed
test: skip live cellosaurus helper calls when offline
mtran-code
committed
fix: accept full cellosaurus sort field set
mtran-code
committed
chore: fix cellosaurus external resource spelling
mtran-code
committed
fix: avoid passing unsupported fuzzy arg to cellosaurus request
mtran-code
committed
fix: use static cellosaurus fields when schema lookup fails
mtran-code
committed
refactor: replace ifelse with explicit conditionals in cellosaurus parser
mtran-code
committed
chore: make cellosaurus parallelism configurable via mc.cores option
mtran-code
committed
style: group all query columns at end of cellosaurus results
mtran-code
committed
docs: clarify mapCell2Accession variadic parameter
mtran-code
committed
refactor: avoid length-based indices in cellosaurus queries
mtran-code
committed
test: relax row expectations for live cellosaurus API
mtran-code
committed
style: prefer isTRUE checks in cellosaurus helpers
mtran-code
committed
refactor: extract reusable cellosaurus match strategies
mtran-code
committed
chore: remove outdated TODO note
mtran-code
committed

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