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draft pull request for version update to collect all commits and prs related to this#45

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vskode wants to merge 29 commits intomainfrom
v1.3.0
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draft pull request for version update to collect all commits and prs related to this#45
vskode wants to merge 29 commits intomainfrom
v1.3.0

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@vskode vskode commented Dec 12, 2025

version 1.3.0 will include the following (current plans):

  • continuing failed runs without regenerating already created embeddings
  • add 4th tab with classifier selection and application on generated embeddings
  • bunch of small fixes

@vskode vskode added this to the v1.3.0 milestone Dec 12, 2025
@vskode vskode self-assigned this Dec 12, 2025
@vskode vskode added bug Something isn't working enhancement New feature or request labels Dec 12, 2025
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vskode commented Dec 12, 2025

with #44 the run can now be continued where left off, however this only works for embeddings. classification that has already been produced is not saved. fix this please

vskode added 14 commits December 12, 2025 17:36
@vskode
#43, #45 work in progress of enableing continuing the classification …
93ee1ac 
…from where it left off
@vskode
#43, #45, only save classifications where they exceed threshold, othe…
dbd2904 
…rwise only generate them at dashboard time as 'under_thresh'
@vskode
hot fix, once i swap axes the first dimension is classes and the seco…
cdbcf24 
…nd is time
@vskode
#45 fix downloading beats checkpoint when running naturebeats as it's…
3d9b8ee 
… a prerequisite
@vskode
#45 enable running clfier on existing embeddings, #38 add 4th tab for…
c1ad0af 
… linear classifier application
@vskode
#45 for linear classifier results, the species are now ordered based …
61210a2 
…on number of occurrances
@vskode
#45, assign device on windows, otherwise it tries cuda which then fails
d2afdc5
@vskode
#45 remove distance calculations
c3173b8
@vskode
add changes from apply_linear_classifier, #45, #46
653af0a
@vskode
Merge branch 'continue_failed_runs' into make_classifier_class
648f950
@vskode
rename modules to make things more consistens and logical, #45, #46
ec1c360
@vskode
rename embedding_generation_pipelines to model_pipelines, seeing that…
1ec69ea 
… we are also able to use models for classification not just embeddings, #45, #46
@vskode
complete restructuring to a running verison again #45, #46
088f34b
@vskode
more renaming of the main and main_utils files #45, #46
4487cb2
vskode added a commit that referenced this pull request Feb 6, 2026
@vskode
integrate accumulation by week and fix bugs in classification #38, #39,
8b8da87 
#45
vskode added a commit that referenced this pull request Feb 6, 2026
@vskode
some more bug fixes and restructuring #45
e29128c
vskode added a commit that referenced this pull request Feb 6, 2026
@vskode
fix summation over days, prevent houndreds of figures being created a…
31ff7ee 
…nd initialize two classifier comparison, #45, #38, #39
vskode added a commit that referenced this pull request Feb 15, 2026
@vskode
wip #45, restructuring and exposing ground truth creation for multila…
e0f9389 
…bel annotations
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