3.1.0

What's Changed

• Add pathogen-cluster-mutations command by @huddlej in #36

Full Changelog: 3.0.0...3.1.0

3.0.0

What's Changed

• Update defaults for pathogen-embed and pathogen-cluster to match those used in the corresponding publication by @huddlej in #35

Full Changelog: 2.3.0...3.0.0

2.3.0

What's Changed

• Enable clustering by distance matrix input by @huddlej in #33

Full Changelog: 2.2.1...2.3.0

2.2.1

What's Changed

• Automatically pick SVD algorithm for PCA from data by @huddlej in #31
• Replace internal sorting with check for order by @huddlej in #32

Full Changelog: 2.2.0...2.2.1

2.2.0

What's Changed

• Release to PyPI with GitHub Actions by @huddlej in #30
• Use inferred types for external embedding params by @huddlej in #29

Full Changelog: https://github.com/blab/pathogen-embed/commits/2.2.0