Discussions

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  GRN finetuning

  sowhat0001 asked Nov 26, 2025 in Q&A · Unanswered

  

  

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  Tutorial for Attention GRN

  zdlugosz asked Nov 12, 2025 in Q&A · Unanswered

  

  

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  scGPT applicable to predicting effects of combinations of knockout mutations, instead of gain of function perturbations?

  swillus-august asked Sep 23, 2025 in Q&A · Unanswered

  

  

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  Perturbation tutorial not working

  yinjun111 started Apr 30, 2024 in General

  

  

  

  

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  ValueError: 77% of the tokens in adata.var[feature_name] are not in vocab.

  siyao-zhu asked Jul 31, 2025 in Q&A · Unanswered

  

  

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  Practical application in answering biological questions

  pavsol started Jul 14, 2025 in General

  

  

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  Gene expression matrix reconstruction

  GuilhermePocas asked Jun 27, 2025 in Q&A · Unanswered

  

  

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  Integration to HuggingFace 🤗

  subercui started Nov 8, 2023 in Ideas

  

  

  

  

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  Inquiry on scGPT Training Benchmarks and Resource Requirements

  agni-zf started Nov 22, 2024 in General

  

  

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  Preprocessing Questions

  nc1m asked Aug 9, 2024 in Q&A · Unanswered

  

  

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  Documentation for the scBank data structure

  subercui announced Nov 8, 2023 in Announcements

  

  

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  Perturbation pipeline inference?

  GXcells started Mar 12, 2024 in General

  

  

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  Eval pipeline

  dhall1995 started Feb 2, 2024 in General

  

  

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  Question about perturbation applcaition?

  ShahrzadH asked Nov 16, 2023 in Q&A · Unanswered

  

  

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  Multiomic tutorial with cellular predictor donwtask.

  Ragagnin started Nov 8, 2023 in Ideas

  

  

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  Question about how the "vocab" created.

  Alex2975 asked Nov 2, 2023 in Q&A · Unanswered

  

  

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  How much compute was used to train scGPT?

  bill-95 started Jun 19, 2023 in General

  

  

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  Welcome to scGPT Discussions!

  subercui announced May 31, 2023 in Announcements

  

  

  

  

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