Personalized Brain Decoding of Spontaneous Pain in Individuals With Chronic Pain

This repository is for sharing the codes that are used in the following paper.

Jae-Joong Lee, Seongwoo Jo, Sungkun Cho, Choong-Wan Woo*, Personalized Brain Decoding of Spontaneous Pain in Individuals With Chronic Pain, in revision

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System Requirements

General Software

• MATLAB

Experiment

• Psychtoolbox 3.0

Preprocessing

• FSL 6.0
• FreeSurfer 7.2
• AFNI 23.0
• Connectome Workbench 1.5.0
• ciftify ➤ https://github.com/edickie/ciftify

Analysis

• Connectome Workbench 1.5.0
• MRIcroGL 1.2
• MSCcodebase ➤ https://github.com/MidnightScanClub/MSCcodebase
• cocoanCORE ➤ https://github.com/cocoanlab/cocoanCORE
• Schaefer 500-region parcellation ➤ https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal
• Infomap 0.15.7 ➤ https://github.com/mapequation/infomap

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Installation

Clone this repository:

git clone https://github.com/cocoanlab/DEIPP.git

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How to Run

Stage	Script	Notes
Experiment	DEIPP.m	Psychtoolbox-based fMRI task
Preprocessing	preprocessing_cocoan_anat.m & preprocessing_cocoan_func.m	Anatomical and functional preprocessing
Analysis	analysis_generate_command.m	Main analysis

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Support / Questions

For inquiries or assistance, please contact:

• Choong-Wan Woo — choongwan.woo@gmail.com
• Jae-Joong Lee — jaejoonglee92@gmail.com