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@dimi-lab

DIMI lab

Data science and Informatics for Multiomics Integration

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  1. SpaFlow SpaFlow Public

    A Nextflow pipeline for QC and unsupervised clustering of spatial biology data

    Nextflow 13 1

  2. The_Handy_OMERO_Toolbox The_Handy_OMERO_Toolbox Public

    An assortment of scripts used to interface with our internal instance of OMERO and accomplish custom tasks

    Jupyter Notebook 1

Repositories

Showing 10 of 28 repositories
  • qupath-extension-cloud-omezarr Public

    QuPath extension to load OME-Zarr images from cloud storage

    dimi-lab/qupath-extension-cloud-omezarr’s past year of commit activity
    Kotlin 2 GPL-3.0 0 8 (1 issue needs help) 0 Updated Dec 28, 2025
  • MorphoSpectrum-MIL Public

    MorphoXAI: A human-in-the-loop explanation framework for morphologically transparent AI predictions from whole-slide images

    dimi-lab/MorphoSpectrum-MIL’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 18, 2025
  • STITCH Public
    dimi-lab/STITCH’s past year of commit activity
    R 0 0 0 0 Updated Dec 5, 2025
  • TMA_Graph_Embedding Public
    dimi-lab/TMA_Graph_Embedding’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 21, 2025
  • AnnotationStreamlit Public
    dimi-lab/AnnotationStreamlit’s past year of commit activity
    Python 0 0 0 0 Updated Nov 20, 2025
  • DicomToSVS Public
    dimi-lab/DicomToSVS’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 20, 2025
  • TIL-SIL-Detection Public
    dimi-lab/TIL-SIL-Detection’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 20, 2025
  • SpaFlow Public

    A Nextflow pipeline for QC and unsupervised clustering of spatial biology data

    dimi-lab/SpaFlow’s past year of commit activity
    Nextflow 13 MIT 1 0 0 Updated Nov 4, 2025
  • OLT-Alloimmunity Public
    dimi-lab/OLT-Alloimmunity’s past year of commit activity
    0 0 0 0 Updated Oct 27, 2025
  • GSEA_custom Public
    dimi-lab/GSEA_custom’s past year of commit activity
    Python 0 0 0 0 Updated Oct 8, 2025
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