troika-toolbox: MATLAB scripts for analyzing Troika SPT data

A small set of programs dedicated to analyzing Troika's trjR variables.

What's in the box

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Name	Description
troikaEnum	Find when a track starts, ends, and how long it lasted for.
troikaPrecision	Calculate Troika's precision in the context of your camera.
trjR_separator	Separates combined trjR files into parts with the same number of trajectories.

converters/

Name	Description
toMsdanalyzer	Convert trjRs into tracks for msdanalyzer.
toTrack_analysis	Convert trjRs into tracks for track_analysis.

functions/

Name	Description
traj_filt	Get tracks that last x frames or greater. Also interpolate between lost frames of tracking.
traj_firstframe	Removes all tracks present since the first frame.
traj_sorter	Separates "fast" and "slow" tracks.

graphs/

Name	Description
displacements	Plot the displacement of tracks vs. time-lag.
trackEvolutions	Plot how tracks change over time.
vanHove	Plot and fit a van Hove correlation graph.
fitRec	Plot the reconstructed van Hove correlation graph from Track Analysis.

msd/

N/A