Updated mysql version to 8.0#117

Open

yoldas wants to merge 412 commits intoemrojo:masterfrom

sanger-archive:mysql-upgrade

This pull request is big! We're only showing the most recent 250 commits

Commits on Mar 22, 2022

Freeze strings and remove unecessary imports
James Glover
committed
Avoid passing round instance variable
James Glover
committed
Add simplecov for test coverage
James Glover
committed
Remove unused code
James Glover
committed

Commits on Mar 23, 2022

Add simple Cov config
James Glover
committed
Fix asset url warnings
James Glover
committed
Remove warren initializer
James Glover
committed
Remove unused code
James Glover
committed
Remove unused code
James Glover
committed

Commits on Mar 25, 2022

Rename class_name to purpose_name
James Glover
committed
Minor Spec performance improvements
James Glover
committed
Initial improvement on applying layout
James Glover
committed
Fix accidental external calls
James Glover
committed

Commits on Mar 29, 2022

Initial pass on asset_groups controller
James Glover
committed

Commits on Mar 30, 2022

Initial improvement on applying layout
James Glover
committed
Rubocop performance fixes
James Glover
committed
Remove benchmarking
James Glover
committed
Remove temporary shim for new step actions
James Glover
committed
Remove unused code
James Glover
committed
Rename get_remote_asset
James Glover
committed

Commits on Mar 31, 2022

Refactor RSpec tests for improved reuse
James Glover
committed
Clean up rubocop_todo.yml
James Glover
committed

Commits on Apr 1, 2022

Fix tube rack import and asset syncing
James Glover
committed
Simplify uuid generation
James Glover
committed
Index uuid
James Glover
committed
Improve robustness of racking
James Glover
committed
Remove redundanct generate_uuid
James Glover
committed
Clear up temporary code
James Glover
committed
Restore unseeded database on CI
James Glover
committed
Update puma to version 5.6.4
depfu[bot]
authored

Commits on Apr 5, 2022

Remove irrelevant bits of rubocop.yml
James Glover
committed
Update node version
James Glover
committed
Update webmock comment in light of actually using it fully
James Glover
committed
Fix potential selection of wrong fact
James Glover
committed
Revert accidental change of default database
James Glover
committed

Commits on Apr 9, 2022

Update moment to version 2.29.2
depfu[bot]
authored

Commits on Apr 12, 2022

Bump nokogiri from 1.13.3 to 1.13.4
dependabot[bot]
authored

Commits on Apr 13, 2022

Update and unify node versions
James Glover
committed
Remove fluidgx registration
James Glover
committed
Use the actual method arguments 🤦‍♂️
James Glover
committed
Clean up barcode parser
James Glover
committed

Commits on Apr 14, 2022

Commits on Apr 22, 2022

Commits on Apr 25, 2022

Added test to fix printing error
emrojo
committed

Commits on Apr 26, 2022

Commits on Apr 27, 2022

Rubocop - autocorrects
James Glover
committed
Annotate runners with todo
James Glover
committed
Rubocop: Style/AccessorGrouping
James Glover
committed
Rubocop: Style/Alias
James Glover
committed
Rubocop: Style/BarePercentLiterals
James Glover
committed
Rubocop: Style/BlockComments
James Glover
committed
Rubocop: Style/BlockDelimiters
James Glover
committed
Rubocop: Style/ColonMethodCall
James Glover
committed
Add prettier
James Glover
committed
Rubocop: Rubocop: Style/RedundantBegin
James Glover
committed
Move documentation todo inline
James Glover
committed
Rubocop: Style/ParenthesesAroundCondition
James Glover
committed
rubocop:todo Layout/LineLength
James Glover
committed
Fix linting action
James Glover
committed
Prettier autofixes
James Glover
committed
Update all Yarn dependencies (2022-04-27)
depfu[bot]
authored
Update all of rails to version 5.2.7.1
depfu[bot]
authored
Merge pull request #195 from sanger/rubocop_and_layout
JamesGlover
authored
Merge branch 'develop' into depfu/batch_all/yarn/2022-03-14
JamesGlover
authored
Merge pull request #198 from sanger/depfu/update/group/rails-5.2.7.1
JamesGlover
authored
Merge pull request #169 from sanger/depfu/update/yarn/jquery-3.6.0
JamesGlover
authored
Merge branch 'develop' into depfu/batch_all/yarn/2022-03-14
JamesGlover
authored
Merge pull request #170 from sanger/depfu/batch_all/yarn/2022-03-14
JamesGlover
authored
Bump handlebars from 4.1.2 to 4.7.7
dependabot[bot]
authored
Switch to yard for documentation
James Glover
committed
Merge pull request #200 from sanger/switch_to_yard
JamesGlover
authored
Fix tube import
James Glover
committed
Unify import and refresh steps
James Glover
committed
Include request mocks
James Glover
committed

Commits on Apr 28, 2022

Merge pull request #130 from sanger/dependabot/npm_and_yarn/handlebars-4.7.7
JamesGlover
authored

Commits on Apr 29, 2022

Merge pull request #201 from sanger/fix_tube_import
JamesGlover
authored
Move babel loader under production
James Glover
committed
Add information to well
James Glover
committed

Commits on May 2, 2022

Update all Yarn dependencies (2022-05-02)
depfu[bot]
authored

Commits on May 3, 2022

Merge pull request #204 from sanger/depfu/batch_all/yarn/2022-05-02
JamesGlover
authored

Commits on May 13, 2022

Migrate existing tests to webmock
James Glover
committed
Move PMB::PrintJob to own context
James Glover
committed
Update json-api-client
James Glover
committed
Add pending v2 tests
James Glover
committed
Add v2 support to sample extraction
James Glover
committed
Remove unused username parameter
James Glover
committed
Remove print_asset
James Glover
committed
V1 and V2 error handling
James Glover
committed
Cleanup websocket events
James Glover
committed
Improve feedback on missing locations
James Glover
committed
Document barcode createable parser
James Glover
committed
Remove unused methods
James Glover
committed
Fix refresh of well modeled tubes
James Glover
committed
Minor code improvements
James Glover
committed
Fixes with_predicate to handle symbols
James Glover
committed
Update payload to match expected by PMB
James Glover
committed
Correct pmbv2 payload
James Glover
committed
Remove unused templates and simplify
James Glover
committed

Commits on May 18, 2022

Commits on May 19, 2022

Add JSON API resources monkey patch
James Glover
committed

Commits on May 24, 2022

Add flipper for feature flipping
James Glover
committed
Configure test suite for flipper
James Glover
committed
Add cleaner handling of errors on print failure
James Glover
committed
Add flag to completely decouple printing
James Glover
committed
Flipper features register themselves at startup
James Glover
committed

Commits on May 25, 2022

Add initial asset group printing button
James Glover
committed

Commits on May 27, 2022

Add the ability to print asset groups from frontend
James Glover
committed
Propagate feature flags into front-end
James Glover
committed
Use barcode as defined by SS
emrojo
committed
Added test for barcode obtaining from SS
emrojo
committed

Commits on May 31, 2022

Improve failure errors to handle CI issues
James Glover
committed
Mock out report_error to prevent redis connection on CI
James Glover
committed

Commits on Jun 1, 2022

Merge pull request #213 from sanger/develop
JamesGlover
authored

Commits on Jun 7, 2022

Commits on Jun 8, 2022

Commits on Jun 13, 2022

Update all Bundler dependencies (2022-06-13)
depfu[bot]
authored

Commits on Jun 20, 2022

Update all Yarn dependencies (2022-06-20)
depfu[bot]
authored

Commits on Jun 30, 2022

Update rails-html-sanitizer to version 1.4.3
depfu[bot]
authored

Commits on Jul 6, 2022

Commits on Jul 13, 2022

Update all of rails to version 5.2.8.1
depfu[bot]
authored

Commits on Jul 21, 2022

Bump terser from 4.8.0 to 4.8.1
dependabot[bot]
authored

Commits on Jul 22, 2022

Update tzinfo to version 1.2.10
depfu[bot]
authored

Commits on Aug 25, 2022

Commits on Sep 8, 2022

Machine barcode not supported
emrojo
committed

Commits on Sep 9, 2022

Commits on Sep 12, 2022

Tests added
emrojo
committed

Commits on Sep 13, 2022

Commits on Sep 14, 2022

Commits on Oct 28, 2022

Commits on Nov 17, 2022

Bump loader-utils from 1.4.0 to 1.4.2
dependabot[bot]
authored

Commits on Nov 24, 2022

github workflows update to ubuntu latest
andrewsparkes
committed

Commits on Nov 29, 2022

Merge pull request #241 from sanger/dpl-537-github-workflows-ubuntu-latest
andrewsparkes
authored

Commits on Dec 7, 2022

Bump decode-uri-component from 0.2.0 to 0.2.2
dependabot[bot]
authored

Commits on Dec 8, 2022

Bump nokogiri from 1.13.9 to 1.13.10
dependabot[bot]
authored

Commits on Dec 13, 2022

Bump loofah from 2.18.0 to 2.19.1
dependabot[bot]
authored

Commits on Dec 14, 2022

Update rails-html-sanitizer to version 1.4.4
depfu[bot]
authored

Commits on Jan 18, 2023

Commits on Jan 19, 2023

Commits on Jan 27, 2023

Commits on Jan 28, 2023

Bump sanitize from 6.0.0 to 6.0.1
dependabot[bot]
authored

Commits on Jan 30, 2023

Commits on Feb 2, 2023

Commits on Jun 14, 2023

Using container-retention-policy action
Sangeetha-Bheeman
committed

Commits on Jun 19, 2023

Commits on Aug 1, 2023

Updated mysql version to 8.0
yoldas
committed