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segment command errors out with

Status: Open.

#1004 In etal/cnvkit;

· kmavrommatis opened on Feb 19, 2026

update docker image for segmentation method 'hmm'

Status: Open.

#1003 In etal/cnvkit;

· kmavrommatis opened on Feb 19, 2026

Error with segment

bug

Status: Open.

#1002 In etal/cnvkit;

· kmavrommatis opened on Feb 18, 2026

Coverage command for FFPE tissue

enhancement

Status: Open.

#999 In etal/cnvkit;

· shashwatsahay opened on Feb 16, 2026

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Add Cancer GIAB to benchmark suite

enhancement

Status: Open.

#977 In etal/cnvkit;

· etal opened on Jan 27, 2026

Avoiding centromere-bridging segments

enhancement

Status: Open.

#969 In etal/cnvkit;

· ilykos opened on Aug 29, 2025

Call with --filter ci question

mystery

Status: Open.

#964 In etal/cnvkit;

· Poly44 opened on Aug 16, 2025

issue with automatic sex detection in cnvkit.py batch: female samples labelled as male

enhancement

question

Status: Open.

#954 In etal/cnvkit;

· eesiribloom opened on Jun 8, 2025

Strelka VCF missing GT field causes error during "call" command

bug

Status: Open.

#943 In etal/cnvkit;

· brandon-hastings opened on Jan 29, 2025

segment - ValueError: cannot convert float NaN to integer

question

Status: Open.

#942 In etal/cnvkit;

· pontushojer opened on Jan 24, 2025

Differnece between running batch and each step individually

bug

mystery

question

Status: Open.

#935 In etal/cnvkit;

· shashwatsahay opened on Dec 21, 2024

Somatic and germline CNV calling from WGS data

question

Status: Open.

#932 In etal/cnvkit;

· anitha-ravichandran opened on Dec 10, 2024