Improve file management for light emission simulations.

[GernotMaier]

Improve file management for light emission simulations:

• use consistently the updated runner_services to have a consistent directory management.
• use runner_services for improved output and log file naming consistent with rest of simtools.
• submission scripts and stdout/stderr are now in /sub (as in the other simulation production tools)
• several changes to have function names and calls mirrored from simulate_prod and simulate_flasher / illuminator (simplifies maintenance)

e.g. the file tree for flasher simulations looks now like:

simtools-output
├── light_emission
│   └── flasher_pulse_shape_MSTN-04_MSFx-NectarCam.dat
├── model
│   └── 7.0.0
│       ├── atm_profile_model_1.dat -> /workdir/external/simtools/simtools-output/model/7.0.0/atmprof_ecmwf_north_winter_fixed.dat
│       ├── atm_trans_2156_1_3_2_0_0_0.1_0.1.dat
│       ├── atmprof_ecmwf_north_winter_fixed.dat
│       ├── atmprof1.dat -> /workdir/external/simtools/simtools-output/model/7.0.0/atmprof_ecmwf_north_winter_fixed.dat
│       ├── Benn_LaPalma_sky_converted.lis
│       ├── camera_CTA-MST-NectarCam_20191120_majority-3nn.dat
│       ├── CTA-North-MSTN-04_simulate_flasher.cfg
│       ├── mirror_CTA-100_1.20-86-0.04.dat
│       ├── NectarCAM_lightguide_efficiency_POP_131019.dat
│       ├── nsb_spectrum_dark.ecsv
│       ├── Pulse_template_nectarCam_17042020-noshift.dat
│       ├── qe_R12992-100-05c.dat
│       ├── ray-tracing-North-MST-NectarCam-D-d10.0-za20.0_validate_optics.ecsv
│       ├── ref_MST-North-MLT_2022_06_28.dat
│       ├── spe_afterpulse_pdf_NectarCam_18122019.dat
│       └── transmission_lst_window_No7-10_ave.dat
├── sim_telarray
│   ├── full_simulation_run000010_North_7.0.0_simulate_flasher.hdata.zst
│   └── full_simulation_run000010_North_7.0.0_simulate_flasher.simtel.zst
└── sub
    ├── full_simulation_run000010_North_7.0.0_simulate_flasher.err
    ├── full_simulation_run000010_North_7.0.0_simulate_flasher.out
    └── full_simulation_run000010_North_7.0.0_simulate_flasher.sh

while before it looked like:

simtools-output
├── ff-1m.ctsim.hdata
├── ff-1m.simtel.zst
├── logfile.log
├── model
│   └── 7.0.0
│       ├── atm_profile_model_1.dat -> /workdir/external/simtools-dev/simtools-output/model/7.0.0/atmprof_ecmwf_north_winter_fixed.dat
│       ├── atm_trans_2156_1_3_2_0_0_0.1_0.1.dat
│       ├── atmprof_ecmwf_north_winter_fixed.dat
│       ├── atmprof1.dat -> /workdir/external/simtools-dev/simtools-output/model/7.0.0/atmprof_ecmwf_north_winter_fixed.dat
│       ├── Benn_LaPalma_sky_converted.lis
│       ├── camera_CTA-MST-NectarCam_20191120_majority-3nn.dat
│       ├── CTA-North-MSTN-04_simulate_flasher.cfg
│       ├── mirror_CTA-100_1.20-86-0.04.dat
│       ├── NectarCAM_lightguide_efficiency_POP_131019.dat
│       ├── nsb_spectrum_dark.ecsv
│       ├── Pulse_template_nectarCam_17042020-noshift.dat
│       ├── qe_R12992-100-05c.dat
│       ├── ray-tracing-North-MST-NectarCam-D-d10.0-za20.0_validate_optics.ecsv
│       ├── ref_MST-North-MLT_2022_06_28.dat
│       ├── spe_afterpulse_pdf_NectarCam_18122019.dat
│       └── transmission_lst_window_No7-10_ave.dat
├── pulse_shapes
│   └── flasher_pulse_shape_MSTN-04_MSFx-NectarCam.dat
├── scripts
│   └── ff-1m-light_emission.sh
└── sim_telarray

[Copilot]

Pull request overview

This PR improves file management for light emission simulations by consistently using runner_services for directory and file naming, aligning with conventions used in other simulation production tools.

Changes:

• Refactored SimulatorLightEmission to use runner_services for consistent file and directory management
• Generalized RunnerServices to support both CorsikaConfig and dict configurations
• Removed output_prefix parameter and updated file naming to match other simulation tools
• Moved submission scripts and logs to <output dir>/sub subdirectory

Reviewed changes

Copilot reviewed 18 out of 18 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
src/simtools/simtel/simulator_light_emission.py	Major refactoring to use runner_services, removed prefix logic, renamed methods
src/simtools/runners/runner_services.py	Added support for dict configs and iact_output file type
src/simtools/runners/simtel_runner.py	Renamed corsika_config parameter to config
src/simtools/runners/corsika_runner.py	Refactored to use runner_service.get_file_name()
src/simtools/runners/corsika_simtel_runner.py	Updated RunnerServices initialization with named parameters
src/simtools/simtel/simulator_array.py	Updated parent class initialization with named parameters
src/simtools/applications/simulate_flasher.py	Removed output_prefix parameter, added verify_simulations call
src/simtools/applications/simulate_illuminator.py	Removed output_prefix parameter, added run_mode to config
tests/unit_tests/test_simulator.py	Added zenith_angle to mock configuration
tests/unit_tests/simtel/test_simulator_light_emission.py	Updated tests for renamed methods and refactored implementation
tests/unit_tests/runners/test_simtel_runner.py	Updated test to use config parameter name
tests/unit_tests/runners/test_runner_services.py	Updated tests with named parameters, added new test case
tests/integration_tests/config/*.yml	Updated expected file paths to match new directory structure

[ctao-sonarqube]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
98.6% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube