ML predictor integration into pvacseq#1333

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jyao36 wants to merge 17 commits into7.0.0from

Commits on Nov 3, 2025

Incorporate ml_predictor module into pvactools; Uploaded associated model artifacts; modified argument parser and pvacseq run.py file to run the predictor as part of pvacseq; added test files and s…
jyao36
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Commits on Nov 4, 2025

Add imbalanced-learn dependency installation to .github/workflows/tests.yml
jyao36
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Commits on Nov 19, 2025

add add_ml_predictions.py and test script
jyao36
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Commits on Nov 21, 2025

fixed test_pvacseq_add_ml_predictions.py
jyao36
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Commits on Nov 25, 2025

Comment out tests that fail nondeterministically
susannasiebert
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Commits on Dec 1, 2025

update output file format to preserve original class I aggregated format.
jyao36
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Commits on Dec 2, 2025

Commits on Dec 10, 2025

Commits on Dec 12, 2025

Commits on Dec 19, 2025

incorporate comments on documentation files
jyao36
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