[WIP]: changes that accumulate during working on checkm parsers#65
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bernt-matthias wants to merge 25 commits intohexylena:mainfrom
Open
[WIP]: changes that accumulate during working on checkm parsers#65bernt-matthias wants to merge 25 commits intohexylena:mainfrom
bernt-matthias wants to merge 25 commits intohexylena:mainfrom
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This was referenced Apr 29, 2020
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Galaxy part seems ready. But now cwl can't cope anymore... |
hexylena
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looks like we might need to update the cwl example, looks fine though to use the output of tmp.cwl / tmp-sub.cwl |
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- implement output to dir (--directory) to output separate tool per subparser - prepare to include global macro file (for including requirements, citations, help, ...)
corresponding to hexylena/galaxyxml#18
- output to dir, diff dirs, planemo dir
since dicts (and hopefully also attributes) are ordered
- remove '.py' extension if existent - replace '-' by '_' - for id: replace ' ' by '_' also overwrite tool xml files (wo warning)
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…rnt-matthias/argparse2tool into topic/improvements_for_checkm
and test cleanup
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if directory is specified.
- print error message if parameter can not be translated - cwl: implement StoreConst, Help, and Version actions - xml: implement HelpAction
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Will add commits as they come. Early feedback is welcome.