Note that this is NOT a proper release version ChAMP and under intensive modification and upgrade, the formally released one is on Bioconductor.
ChAMP package is designed for conduct DNA methylation array analysis, providing service from data loading, to final gene set enrichment analysis .e.g.
More information could be find in Bioconductor page. Also we provided a more detailed guide in the HTML vignette.
Currently, ChAMP package is maintained by YuanTian1991, if you met any problem during using the software, please email: champ450K@gmail.com
Install Code:
git clone https://github.com/YuanTian1991/ChAMP.git
R CMD INSTALL ChAMP
Current latest version: 2.29.1, which support EPICv2, but it must be used along with ChAMPdata >= 2.23.1