Installation

ncov-tools is available on GitHub at: https://github.com/jts/ncov-tools. The conda environment manager is used to create and manage an environment with the required dependencies which have been included in the environment.yaml file found in the ncov-tools repository.

Download and install conda and documentation is available here: https://docs.conda.io/projects/conda/en/latest/user-guide/install/

Once conda is installed, you can install the mamba package which is a faster implementation for installing conda packages.

$ conda install -c conda-forge mamba

Download the ncov-tools repository:

$ git clone git@github.com:jts/ncov-tools.git

Once the source code repository has been downloaded, the conda environment can be created:

$ mamba env create -f environment.yml