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Welcome to the getSequenceInfo wiki!

getSequenceInfo is a Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories. The tool also includes supplementary programs to help the analysis of sequencing data. Main details about getSequenceInfo are provided on the GitHub page. A user guide is available here.

Some examples of use are the following:

perl getSequenceInfo.pl -fastq ERR818002,ERR818004

perl getSequenceInfo.pl -k bacteria -s "Helicobacter pylori" -le "Complete Genome" -date 2019-06-01

Examples regarding supplementary tools:

perl supplementary_tools/SRArunInfo.pl SRR7693877,SRR9850824,SRR9850830

perl supplementary_tools/nucleScore.pl *.fasta

perl supplementary_tools/genbank_info.pl *.gbff.gz

perl supplementary_tools/concatenateMultiFasta.pl <multiFasta_file.fasta>