Documentations of all useful scripts for analysis.
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protein_map.R - R script for mapping mqout.tsv Protein Groups to SwissProtIds (genes)
- dir: /home/annieha/Mar2018_helaBenchmark/data/dia/20180911_newLibrary_noDeisotoping/combined_48Fractions_HeLa_120min_200ng_DIA_NoDeisotoping/txt
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osw_new_scheme_ms1_overlap.sh # Script for running osw on the split overlap frames data
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single_concat.sj # Script for concatenating osw split outputs for 1 run
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concatenate_osw_runs.sh # Script for concatenating and sorting the split overlapping frames osw output.
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conversions_testNA.py #diapysef fix script on testing NA values from the scipy.interpolate function
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interpolate_test.py #script for testing the scipy interpolate function for the na values it generated