snakemake redo

Justfile

@@ -1,7 +1,7 @@
 # Setup
 
 install:
-  uv sync --no-cache --frozen
+  uv sync --group dev --group docs --no-cache --frozen
 
 # Packaging
 
@@ -16,8 +16,8 @@ publish:
 # Testing
 
 test:
-  export TEST_TOKEN=$(cat ~/.latch/token) &&\
-    pytest -s tests
+  export TEST_TOKEN=$(cat ~/.latch/token)
+  pytest -s
 
 # Docs
 

pyproject.toml

@@ -12,15 +12,15 @@ include = ["src/**/*.py", "src/**/py.typed", "src/latch_cli/services/init/*"]
 
 [project]
 name = "latch"
-version = "2.67.5"
+version = "2.67.5.a4"
 description = "The Latch SDK"
 authors = [{ name = "Kenny Workman", email = "kenny@latch.bio" }]
 maintainers = [{ name = "Ayush Kamat", email = "ayush@latch.bio" }]
 
 readme = "README.md"
 license = { file = "LICENSE" }
-
 requires-python = ">=3.9"
+
 dependencies = [
   "kubernetes>=24.2.0",
   "pyjwt>=0.2.0",
@@ -31,7 +31,7 @@ dependencies = [
   "scp>=0.14.0",
   "boto3>=1.26.0",
   "tqdm>=4.63.0",
-  "lytekit==0.15.29",
+  "lytekit==0.15.30",
   "lytekitplugins-pods==0.7.4",
   "typing-extensions>=4.12.0",
   "apscheduler>=3.10.0",
@@ -72,7 +72,11 @@ classifiers = [
 
 [project.optional-dependencies]
 pandas = ["pandas>=2.0.0"]
-snakemake = ["snakemake>=7.18.0,<7.30.2", "pulp>=2.0,<2.8"]
+snakemake = [
+  "snakemake",
+  "snakemake-storage-plugin-latch==0.1.11",
+  "snakemake-executor-plugin-latch==0.1.9",
+]
 
 [project.scripts]
 latch = "latch_cli.main:main"
@@ -96,11 +100,10 @@ docs = [
 ]
 
 [tool.ruff]
+line-length = 100
 target-version = "py39"
 
 [tool.ruff.lint]
-preview = true
-
 pydocstyle = { convention = "google" }
 extend-select = [
   "F",

src/latch/registry/upstream_types/values.py

@@ -3,6 +3,8 @@
 
 from typing_extensions import Self, TypeAlias
 
+from latch.utils import Singleton
+
 
 class InvalidValue(TypedDict):
     rawValue: str
@@ -62,9 +64,7 @@ class PrimitiveUnresolvedBlobValueValid(TypedDict):
     valid: Literal[True]
 
 
-PrimitiveUnresolvedBlobValue: TypeAlias = Union[
-    PrimitiveUnresolvedBlobValueValid, InvalidValue
-]
+PrimitiveUnresolvedBlobValue: TypeAlias = Union[PrimitiveUnresolvedBlobValueValid, InvalidValue]
 
 
 class LinkValue(TypedDict):
@@ -108,23 +108,11 @@ class UnionValue(TypedDict):
 DBValue: TypeAlias = Union[PrimitiveValue, ArrayValue, UnionValue]
 
 
-@dataclass(frozen=True)
-class EmptyCell:
+class EmptyCell(Singleton):
     """Empty Registry :class:`Record` value. Singleton.
 
-    The constructor returns a referentially identical instance each call. That is,
-    `EmptyCell() is EmptyCell()`
-
     Used to distinguish explicit `None` values from missing values.
     """
 
-    _singleton: ClassVar[Optional["EmptyCell"]] = None
-
-    def __new__(cls) -> Self:
-        if cls._singleton is None:
-            cls._singleton = super().__new__(cls)
-
-        return cls._singleton
-
 
 Value: TypeAlias = Union[DBValue, EmptyCell]