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If log ratios are provided, subset also the normals if available#388

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lima1 merged 1 commit intolima1:develfrom
DIncalciLab:subset-normal-coverage-with-log2r
Apr 22, 2025
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If log ratios are provided, subset also the normals if available#388
lima1 merged 1 commit intolima1:develfrom
DIncalciLab:subset-normal-coverage-with-log2r

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@lbeltrame
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Otherwise the filtering only on tumor samples may cause a misalignment the moment they're compared with the (unfiltered) normals.

Tested locally, the error is no longer present.

Fixes #386.

Otherwise the filtering only on tumor samples may cause a
misalignment the moment they're compared with the (unfiltered)
normals.

Tested locally, the error is no longer present.

Fixes lima1#386.
@lima1 lima1 merged commit 171b040 into lima1:devel Apr 22, 2025
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@lbeltrame lbeltrame deleted the subset-normal-coverage-with-log2r branch April 23, 2025 05:51
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Pre-computed segmentation: denoised GATK files and interval files from PureCN will not align

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