Scripts regularly used for basic bioinformatics analyses
| Script | Description |
|---|---|
| comparison.md | R comparison of accession recovery with various amplicon sequencing assembly tools |
| copy_files.sh | copies files from subdirectories with matching pattern to destination directory while renaming to original subdirectory |
| counting_blast.sh | determines proportion of contigs out of total assembly matching to a local blast database. assumes outfmt 6 |
| range_finder.py | equivalent of bedtools getfasta for single sequence |
| sasuf_visuals.md | Effector annotation visualisation done for SASUF 2024 workshop |
| workshop_overview.md | Effector annotation pipeline done for SASUF 2024 workshop |